| Literature DB >> 23400313 |
Bolaji N Thomas1, Tanya J Thakur, Li Yi, Aldiouma Guindo, Dapa A Diallo, Jurg Ott.
Abstract
Nitric oxide (NO) is highly reactive, produced in endothelial cells by endothelial NO synthase (eNOS) and has been implicated in sickle cell pathophysiology. We evaluated the distribution of functionally significant eNOS variants (the T786C variant in the promoter region, the Glu298Asp variant in exon 7, and the variable number of tandem repeats (VNTR) in intron 4) in Africans, African Americans and Caucasians. The C-786 variant was more common in Caucasians than in Africans and African Americans. Consistent with other findings, the Asp-298 variant had the highest frequency in Caucasians followed by African Americans, but was completely absent in Africans. The very rare intron 4 allele, eNOS 4c, was found in some Africans and African Americans, but not in Caucasians. eNOS 4d allele was present in 2 Africans. These findings suggest a consistent and widespread genomic diversity in the distribution of eNOS variants in Africans, comparative to African Americans and Caucasians.Entities:
Keywords: endothelial nitric oxide synthase; ethnicity; haplotypes; polymorphisms
Year: 2013 PMID: 23400313 PMCID: PMC3562081 DOI: 10.4137/GRSB.S10857
Source DB: PubMed Journal: Gene Regul Syst Bio ISSN: 1177-6250
Ethno-genotypic frequency of endothelial nitric oxide synthase (eNOS) polymorphisms in populations studied.
| T786C | T, T | 77 (40.7) | 330 (61.1) | 64 (38.8) | 61.64 | 1.31E-12 |
| T, C | 26 (13.8) | 160 (32.1) | 77 (46.7) | |||
| C, C | 6 (3.2) | 9 (1.8) | 24 (14.5) | |||
| Glu298Asp | Glu, Glu | 0 (0.0) | 165 (33.1) | 16 (9.6) | 58.98 | 4.74E-12 |
| Glu, Asp | 27 (14.3) | 330 (66.1) | 67 (40.4) | |||
| Asp, Asp | 162 (85.7) | 4 (0.8) | 83 (50.0) | |||
| Intron 4 | aa | 22 (11.6) | 55 (11.0) | 3 (1.8) | 89.07 | 2.08E-18 |
| ab | 68 (36.0) | 180 (36.1) | 49 (29.7) | |||
| ac | 7 (3.7) | 18 (3.6) | 0 (0.0 | |||
| ad | 2 (1.1) | 0 (0.0) | 0 (0.0) | |||
| bb | 61 (32.3) | 213 (42.7) | 113 (68.5) | |||
| bc | 5 (2.6) | 34 (6.8) | 0 (0.0) | |||
Allelic frequency of endothelial nitric oxide synthase polymorphic forms in populations studied.
| T786C | T | 180 (47.6) | 740 (74.1) | 205 (62.1) | 55.49 | 8.92E-13 |
| C | 38 (10.1) | 98 (9.8) | 125 (37.9) | |||
| Glu298Asp | Glu | 15 (3.9) | 495 (49.6) | 115 (34.9) | 56.77 | 4.71E-13 |
| Asp | 333 (88.1) | 173 (17.3) | 50 (15.1) | |||
| Intron 4 | b | 195 (51.6) | 640 (64.1) | 279 (84.5) | 63.99 | 1.27E-14 |
| c | 119 (31.5) | 308 (30.9) | 55 (16.7) | |||
| a | 12 (3.2) | 51 (5.1) | 0 (0.0) | |||
Figure 1Percentile distribution of endothelial nitric oxide synthase, Glu298Asp, polymorphisms in Caucasian, African American and native African populations.
Notes: Black bars-Africans; blue bars-African Americans; red bars-Caucasians.
Figure 3Percentile distribution of endothelial nitric oxide synthase, T786C polymorphisms in Caucasian, African American and native African populations.
Notes: Black bars-Africans; blue bars-African Americans; red bars-Caucasians.
Estimated haplotype frequencies between groups in study population (Caucasians, African Americans and Africans).
| Glu | T | 4b | 0.4527 | 0.4296 | 0.5522 |
| Glu | T | 4a | 0.3028 | 0.2662 | 0.0084 |
| Glu | C | 4b | 0.0995 | 0.1227 | 0.1516 |
| Glu | C | 4a | 0.0846 | 0.0470 | 0.1454 |
| Asp | T | 4b | 0.0303 | 0.1028 | 0.0554 |
| Asp | T | 4a | 0.0302 | 0.0227 | 0.0052 |
| Asp | C | 4b | 0 | 0.0065 | 0.0772 |
| Asp | C | 4a | 0 | 0.0025 | 0.0046 |
Estimated diplotype frequencies in the study populations (Caucasians, African Americans and Africans).
| 4a | CC | GG | 0 | 2 | 2 | 0 | 0.0110 | 0.01212 |
| 4a | CC | GT | 1 | 0 | 1 | 0.0020 | 0 | 0.00606 |
| 4a | TC | GG | 21 | 10 | 0 | 0.0422 | 0.0549 | 0 |
| 4a | TT | GG | 26 | 12 | 0 | 0.0522 | 0.0659 | 0 |
| 4a | TT | GT | 5 | 5 | 0 | 0.0100 | 0.0275 | 0 |
| 4a,b | CC | GG | 0 | 0 | 3 | 0 | 0 | 0.0182 |
| 4a,b | CC | GT | 3 | 0 | 9 | 0.0060 | 0 | 0.0545 |
| 4a,b | TC | GG | 61 | 30 | 32 | 0.1225 | 0.1648 | 0.1939 |
| 4a,b | TT | GG | 100 | 54 | 2 | 0.2008 | 0.2967 | 0.0121 |
| 4a,b | TT | GT | 67 | 10 | 2 | 0.1345 | 0.0549 | 0.0121 |
| 4b | CC | GG | 1 | 2 | 0 | 0.0020 | 0.0110 | 0 |
| 4b | CC | GT | 3 | 0 | 1 | 0.0060 | 0 | 0.0061 |
| 4b | CC | TT | 1 | 0 | 8 | 0.0020 | 0 | 0.0485 |
| 4b | TC | GG | 78 | 19 | 45 | 0.1566 | 0.1044 | 0.2727 |
| 4b | TT | GG | 79 | 31 | 42 | 0.1586 | 0.1703 | 0.2545 |
| 4b | TT | GT | 51 | 7 | 18 | 0.1024 | 0.0385 | 0.1091 |
| 4b | TT | TT | 1 | 0 | 0 | 0.0020 | 0 | 0 |