| Literature DB >> 24932102 |
Tanya J Thakur1, Aldiouma Guindo2, Londyn R Cullifer1, Yi Li3, Ikhide G Imumorin4, Dapa A Diallo2, Bolaji N Thomas1.
Abstract
Sickle cell disease shows marked variability in severity and pathophysiology among individuals, probably linked to differential expression of various adhesion molecules. In this study, we investigated the differential distribution, genomic diversity and haplotype frequency of endothelial nitric oxide synthase (eNOS) and endothelin-1 (ET-1) polymorphisms, recently implicated as important in modification of disease severity. One hundred and forty five sickle cell disease patients (HbSS) and 244 adult and pediatric controls, without sickle cell disease (HbAA), were recruited from Mali. Genotypic analysis of the functionally significant eNOS variants (T786C, G894T and intron 4) and endothelin-1 (G5665T) was carried out with a polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) assay. Our results show that the wild type alleles are the most frequent for all eNOS variants between cases and controls. Allelic and genotypic frequencies of eNOS polymorphic groups are not significantly different between cases and controls (P > 0.05). In addition, there is no association between eNOS variants and sickle cell disease, contrary to published reports. On the other hand, we report that endothelin-1 (G5665T) mutant variant had the lowest allelic frequency, and is significantly associated with sickle cell disease in Africa (P < 0.05). Similarly, haplotype frequencies were the same between cases and controls, except for the haplotype combining all mutant variants (T, C, 4a; P = 0.01). eNOS polymorphic variants are less frequent, with no significance with sickle cell disease in Africa. On the other hand, endothelin-1 is associated with sickle cell disease, and has the capacity to redefine pathophysiology and possibly serve as modulator of disease phenotype.Entities:
Keywords: endothelial nitric oxide synthase; endothelin-1; pathophysiology; polymorphisms; sickle cell disease
Year: 2014 PMID: 24932102 PMCID: PMC4051816 DOI: 10.4137/GRSB.S14836
Source DB: PubMed Journal: Gene Regul Syst Bio ISSN: 1177-6250
Figure 1Agarose gel electrophoresis showing variants of the intron 4 (27-bp TR) polymorphism of the endothelial nitric oxide synthase gene. Ladder: 100 bp ladder, where the 500 bp band stains most intensely, was used as a molecular weight marker for all gels.
Figure 2Agarose gel electrophoresis showing variants of the G894T (rs1799983) polymorphism of the endothelial nitric oxide synthase gene. PCR products were digested in 2U of BanII restriction endonuclease. bp base pairs; Ladder: 100 bp ladder, where the 500 bp band stains most intensely, was used as a molecular weight marker.
Figure 3Agarose gel electrophoresis showing variants of the T786C (rs2070744) polymorphism of the endothelial nitric oxide synthase gene. PCR products were digested in 2U of MspI restriction endonuclease. bp base pairs; Ladder: 100 bp ladder, where the 500 bp band stains most intensely, was used as a molecular weight marker.
Genotypic frequency of endothelial nitric oxide synthase (eNOS) gene polymorphisms in sickle cell disease and control groups.
| POLYMORPHISM | GENOTYPE | SCD: N = 130 (%) | CONTROLS: N = 231 (%) | ODDS RATIO (95% CI) | |
|---|---|---|---|---|---|
| T786C (rs2070744) | T/T | 93 (71.6) | 165 (71.4) | 1.01 (0.61–1.67) | 1 |
| T/C | 34 (26.1) | 61 (26.4) | 0.99 (0.58–1.65) | 1 | |
| C/C | 3 (2.3) | 5 (2.2) | 1.07 (0.16–5.59) | 1 | |
| G894T (rs1799983) | G/G | 110 (84.6) | 186 (80.5) | 1.33 (0.73–2.51) | 0.3925 |
| G/T | 19 (14.6) | 45 (19.5) | 0.71 (0.37–1.31) | 0.3149 | |
| T/T | 1 (0.8) | 0 (0.0) | ND | ND | |
| Intron 4 (27-bp TR) | 4a/4a | 23 (17.7) | 30 (13.0) | 1.43 (0.75–2.69) | 0.2783 |
| 4a/4b | 47 (36.1) | 103 (45.0) | 0.70 (0.44–1.11) | 0.1201 | |
| 4b/4b | 60 (46.2) | 97 (42.0) | 1.17 (0.74–1.85) | 0.5072 |
Note: Odds ratio was calculated by Fisher’s two-tailed exact test.
Abbreviations: SCD, sickle cell disease; NS, not significant; CI, confidence interval; eNOS, endothelial nitric oxide synthase.
Allelic frequency of endothelial nitric oxide synthase (eNOS) gene polymorphisms in sickle cell disease and controls.
| POLYMORPHISM | ALLELE | SCD: N = 260 (%) | CONTROLS: N = 462 (%) | ODDS RATIO (95% CI) | |
|---|---|---|---|---|---|
| T786C (rs2070744) | T | 220 (84.6) | 391 (84.6) | 0.9987 (0.6440–1.5652) | 1 |
| C | 40 (15.4) | 71 (15.4) | 1.001 (0.6389–1.5529) | 1 | |
| G894T (rs1799983) | G | 239 (91.9) | 417 (90.3) | 0.8145 (0.4494–1.4349) | 0.503 |
| T | 21 (8.1) | 45 (9.7) | 1.2278 (0.6969–2.2251) | 0.503 | |
| Intron 4 (27-bp TR) | 4a | 93 (35.8) | 163 (35.3) | 0.9856 (0.7092–1.3727) | 0.9356 |
| 4b | 167 (64.2) | 297 (64.3) | 1.0147 (0.7285–1.4101) | 0.9356 |
Note: Odds ratio and P-value was calculated by two-tailed Fisher’s exact test.
Abbreviations: SCD, sickle cell disease; NS, not significant; CI, confidence interval; eNOS, endothelial nitric oxide synthase.
Genotypic and allelic frequency of endothelin-1 (G5665T) gene polymorphism in sickle cell disease and control groups.
| POLYMORPHISM | GENOTYPE | SCD: N = 130 (%) | CONTROLS: N = 230 (%) | ODDS RATIO (95% CI) | |
|---|---|---|---|---|---|
| Endothelin-1 (rs5370) | G/G | 103 (79.2) | 157 (68.3) | 0.5646 (0.3259–0.9583) | 0.0277 |
| G/T | 27 (20.8) | 68 (29.6) | 1.5992 (0.9386–2.7790) | 0.0813 | |
| T/T | 0 (0.0) | 5 (2.1) | ND | ND | |
| Endothelin-1 (rs5370) | G | 233 (89.6) | 382 (83.0) | 0.5699 (0.3513–0.8993) | 0.01586 |
| T | 27 (10.4) | 78 (17.0) | 1.7547 (1.1112–2.8467) | 0.01586 |
Note: Odds ratio and P-value was calculated by two-tailed Fisher’s exact test.
Abbreviations: SCD, sickle cell disease; ND, not determined; CI, confidence interval; ET-1, endothelin-1.
Estimated eNOS gene haplotype frequencies between sickle cell disease patients and controls.
| HAPLOTYPE | HAPLOTYPE FREQUENCIES | ODDS RATIO (95% CI) | |||||
|---|---|---|---|---|---|---|---|
| GLU298 ASP | T786C | INTRON 4 | SCD | CONTROLS | SCD VERSUS CONTROL | ||
| Glu | T | 4b | 0.315932 | 0.334733 | 0.329187 | 0.91 (065–1.28) | 0.62 |
| Glu | C | 4b | 0.087914 | 0.054878 | 0.06555 | 1.70 (0.90–3.19) | 0.09 |
| Asp | T | 4b | 0.449453 | 0.437508 | 0.442287 | 1.05 (0.77–1.45) | 0.76 |
| Asp | T | 4a | 0.080769 | 0.07408 | 0.074787 | 1.11 (0.60–2.01) | 0.77 |
| Asp | C | 4b | 0.065932 | 0.075479 | 0.071563 | 0.85 (0.43–1.60) | 0.65 |
| Asp | C | 4a | 0 | 0.023323 | 0.016626 | – | 0.009 |
Notes: Odds ratio and P-value was calculated by two-tailed Fisher’s exact test. Haplotype analysis was carried out with the EH program (lab.rockefeller.edu/ott/programs).
Abbreviations: SCD, sickle cell disease; ND, not determined; CI, confidence interval; eNOS, endothelial nitric oxide synthase.