Literature DB >> 23396542

Evaluating standard terminologies for encoding allergy information.

Foster R Goss1, Li Zhou, Joseph M Plasek, Carol Broverman, George Robinson, Blackford Middleton, Roberto A Rocha.   

Abstract

OBJECTIVE: Allergy documentation and exchange are vital to ensuring patient safety. This study aims to analyze and compare various existing standard terminologies for representing allergy information.
METHODS: Five terminologies were identified, including the Systemized Nomenclature of Medical Clinical Terms (SNOMED CT), National Drug File-Reference Terminology (NDF-RT), Medication Dictionary for Regulatory Activities (MedDRA), Unique Ingredient Identifier (UNII), and RxNorm. A qualitative analysis was conducted to compare desirable characteristics of each terminology, including content coverage, concept orientation, formal definitions, multiple granularities, vocabulary structure, subset capability, and maintainability. A quantitative analysis was also performed to compare the content coverage of each terminology for (1) common food, drug, and environmental allergens and (2) descriptive concepts for common drug allergies, adverse reactions (AR), and no known allergies.
RESULTS: Our qualitative results show that SNOMED CT fulfilled the greatest number of desirable characteristics, followed by NDF-RT, RxNorm, UNII, and MedDRA. Our quantitative results demonstrate that RxNorm had the highest concept coverage for representing drug allergens, followed by UNII, SNOMED CT, NDF-RT, and MedDRA. For food and environmental allergens, UNII demonstrated the highest concept coverage, followed by SNOMED CT. For representing descriptive allergy concepts and adverse reactions, SNOMED CT and NDF-RT showed the highest coverage. Only SNOMED CT was capable of representing unique concepts for encoding no known allergies.
CONCLUSIONS: The proper terminology for encoding a patient's allergy is complex, as multiple elements need to be captured to form a fully structured clinical finding. Our results suggest that while gaps still exist, a combination of SNOMED CT and RxNorm can satisfy most criteria for encoding common allergies and provide sufficient content coverage.

Entities:  

Keywords:  Allergy; Drug Intolerance; Hypersensitivity; Standards; Terminology; Vocabulary, Controlled

Mesh:

Year:  2013        PMID: 23396542      PMCID: PMC3756252          DOI: 10.1136/amiajnl-2012-000816

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  29 in total

1.  Large complex terminologies: more coding choice, but harder to find data--reflections on introduction of SNOMED CT (Systematized Nomenclature of Medicine--Clinical Terms) as an NHS standard.

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2.  Using SNOMED CT in combination with MedDRA for reporting signal detection and adverse drug reactions reporting.

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3.  Normalized names for clinical drugs: RxNorm at 6 years.

Authors:  Stuart J Nelson; Kelly Zeng; John Kilbourne; Tammy Powell; Robin Moore
Journal:  J Am Med Inform Assoc       Date:  2011-04-21       Impact factor: 4.497

4.  Use of standard drug vocabularies in clinical research: a case study in pediatrics.

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Authors: 
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8.  Drug complications in outpatients.

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9.  Towards an ontological theory of substance intolerance and hypersensitivity.

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Journal:  J Biomed Inform       Date:  2010-02-10       Impact factor: 6.317

10.  Determining correspondences between high-frequency MedDRA concepts and SNOMED: a case study.

Authors:  Prakash M Nadkarni; Jonathan D Darer
Journal:  BMC Med Inform Decis Mak       Date:  2010-10-28       Impact factor: 2.796

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  12 in total

1.  Assessments of the Veteran Medication Allergy Knowledge Gap and Potential Safety Improvements with the Veteran Health Information Exchange (VHIE).

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Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  AllergyMap: An Open Source Corpus of Allergy Mention Normalizations.

Authors:  Amy Y Wang; John D Osborne; Maria I Danila; Andrew M Naidech; David M Liebovitz
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

3.  Clinical Concept Value Sets and Interoperability in Health Data Analytics.

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Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

4.  Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings.

Authors:  Hong-Jie Dai; Chu-Hsien Su; Chi-Shin Wu
Journal:  J Am Med Inform Assoc       Date:  2020-01-01       Impact factor: 4.497

5.  Consensus Development of a Modern Ontology of Emergency Department Presenting Problems-The Hierarchical Presenting Problem Ontology (HaPPy).

Authors:  Steven Horng; Nathaniel R Greenbaum; Larry A Nathanson; James C McClay; Foster R Goss; Jeffrey A Nielson
Journal:  Appl Clin Inform       Date:  2019-06-12       Impact factor: 2.342

6.  Automated identification of drug and food allergies entered using non-standard terminology.

Authors:  Richard H Epstein; Paul St Jacques; Michael Stockin; Brian Rothman; Jesse M Ehrenfeld; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2013-06-07       Impact factor: 4.497

7.  Adverse and Hypersensitivity Reactions to Prescription Nonsteroidal Anti-Inflammatory Agents in a Large Health Care System.

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Journal:  J Allergy Clin Immunol Pract       Date:  2017-01-18

8.  Heterogeneity of Drug Allergies and Reaction Lists in Two U.S. Health Care Systems' Electronic Health Records.

Authors:  Sharmitha Yerneni; Sonam N Shah; Suzanne V Blackley; Carlos A Ortega; Kimberly G Blumenthal; Foster Goss; Diane L Seger; Paige G Wickner; Christian M Mancini; David W Bates; Li Zhou
Journal:  Appl Clin Inform       Date:  2022-05-26       Impact factor: 2.762

9.  Food entries in a large allergy data repository.

Authors:  Joseph M Plasek; Foster R Goss; Kenneth H Lai; Jason J Lau; Diane L Seger; Kimberly G Blumenthal; Paige G Wickner; Sarah P Slight; Frank Y Chang; Maxim Topaz; David W Bates; Li Zhou
Journal:  J Am Med Inform Assoc       Date:  2015-09-17       Impact factor: 4.497

10.  An evaluation of a natural language processing tool for identifying and encoding allergy information in emergency department clinical notes.

Authors:  Foster R Goss; Joseph M Plasek; Jason J Lau; Diane L Seger; Frank Y Chang; Li Zhou
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