Literature DB >> 30815088

Clinical Concept Value Sets and Interoperability in Health Data Analytics.

Sigfried Gold1,2, Andrea Batch1, Robert McClure3, Guoqian Jiang4,2, Hadi Kharrazi5, Rishi Saripalle6, Vojtech Huser7,2, Chunhua Weng8,2, Nancy Roderer1, Ana Szarfman9, Niklas Elmqvist1, David Gotz10.   

Abstract

This paper focuses on value sets as an essential component in the health analytics ecosystem. We discuss shared repositories of reusable value sets and offer recommendations for their further development and adoption. In order to motivate these contributions, we explain how value sets fit into specific analytic tasks and the health analytics landscape more broadly; their growing importance and ubiquity with the advent of Common Data Models, Distributed Research Networks, and the availability of higher order, reusable analytic resources like electronic phenotypes and electronic clinical quality measures; the formidable barriers to value set reuse; and our introduction of a concept-agnostic orientation to vocabulary collections. The costs of ad hoc value set management and the benefits of value set reuse are described or implied throughout. Our standards, infrastructure, and design recommendations are not systematic or comprehensive but invite further work to support value set reuse for health analytics. The views represented in the paper do not necessarily represent the views of the institutions or of all the co-authors.

Mesh:

Year:  2018        PMID: 30815088      PMCID: PMC6371254     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  33 in total

1.  Advancing the science for active surveillance: rationale and design for the Observational Medical Outcomes Partnership.

Authors:  Paul E Stang; Patrick B Ryan; Judith A Racoosin; J Marc Overhage; Abraham G Hartzema; Christian Reich; Emily Welebob; Thomas Scarnecchia; Janet Woodcock
Journal:  Ann Intern Med       Date:  2010-11-02       Impact factor: 25.391

2.  FDA's Foray Into Big Data Still Maturing.

Authors:  Bridget M Kuehn
Journal:  JAMA       Date:  2016-05-10       Impact factor: 56.272

3.  PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.

Authors:  Jacqueline C Kirby; Peter Speltz; Luke V Rasmussen; Melissa Basford; Omri Gottesman; Peggy L Peissig; Jennifer A Pacheco; Gerard Tromp; Jyotishman Pathak; David S Carrell; Stephen B Ellis; Todd Lingren; Will K Thompson; Guergana Savova; Jonathan Haines; Dan M Roden; Paul A Harris; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2016-03-28       Impact factor: 4.497

4.  Evaluating common data models for use with a longitudinal community registry.

Authors:  Maryam Garza; Guilherme Del Fiol; Jessica Tenenbaum; Anita Walden; Meredith Nahm Zozus
Journal:  J Biomed Inform       Date:  2016-10-29       Impact factor: 6.317

Review 5.  Representing Knowledge Consistently Across Health Systems.

Authors:  S T Rosenbloom; R J Carroll; J L Warner; M E Matheny; J C Denny
Journal:  Yearb Med Inform       Date:  2017-09-11

6.  Quality evaluation of cancer study Common Data Elements using the UMLS Semantic Network.

Authors:  Guoqian Jiang; Harold R Solbrig; Christopher G Chute
Journal:  J Biomed Inform       Date:  2011-08-05       Impact factor: 6.317

7.  A distributed research network model for post-marketing safety studies: the Meningococcal Vaccine Study.

Authors:  Priscilla Velentgas; Rhonda L Bohn; Jeffrey S Brown; K Arnold Chan; Patricia Gladowski; Crystal N Holick; Judith M Kramer; Cynthia Nakasato; Claire M Spettell; Alexander M Walker; Fang Zhang; Richard Platt
Journal:  Pharmacoepidemiol Drug Saf       Date:  2008-12       Impact factor: 2.890

8.  Clinical phenotyping in selected national networks: demonstrating the need for high-throughput, portable, and computational methods.

Authors:  Rachel L Richesson; Jimeng Sun; Jyotishman Pathak; Abel N Kho; Joshua C Denny
Journal:  Artif Intell Med       Date:  2016-06-25       Impact factor: 5.326

9.  Applying standardized drug terminologies to observational healthcare databases: a case study on opioid exposure.

Authors:  Frank J Defalco; Patrick B Ryan; M Soledad Cepeda
Journal:  Health Serv Outcomes Res Methodol       Date:  2012-10-27

10.  A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform.

Authors:  Huan Mo; Guoqian Jiang; Jennifer A Pacheco; Richard Kiefer; Luke V Rasmussen; Jyotishman Pathak; Joshua C Denny; William K Thompson
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2016-07-20
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  4 in total

1.  The Use of Inter-terminology Maps for the Creation and Maintenance of Value Sets.

Authors:  Kin Wah Fung; Julia Xu; Sigfried Gold
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

Review 2.  Review of Clinical Research Informatics.

Authors:  Anthony Solomonides
Journal:  Yearb Med Inform       Date:  2020-08-21

3.  Categorizing metadata to help mobilize computable biomedical knowledge.

Authors:  Brian S Alper; Allen Flynn; Bruce E Bray; Marisa L Conte; Christina Eldredge; Sigfried Gold; Robert A Greenes; Peter Haug; Kim Jacoby; Gunes Koru; James McClay; Marc L Sainvil; Davide Sottara; Mark Tuttle; Shyam Visweswaran; Robin Ann Yurk
Journal:  Learn Health Syst       Date:  2021-05-09

4.  An Environmental Scan of Sex and Gender in Electronic Health Records: Analysis of Public Information Sources.

Authors:  Francis Lau; Marcy Antonio; Kelly Davison; Roz Queen; Katie Bryski
Journal:  J Med Internet Res       Date:  2020-11-11       Impact factor: 5.428

  4 in total

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