Literature DB >> 23377935

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

K C Y Lee1, C W Herbold, P F Dunfield, X C Morgan, I R McDonald, M B Stott.   

Abstract

Small-subunit (SSU) rRNA gene sequences associated with the phylum Armatimonadetes were analyzed using multiple phylogenetic methods, clarifying both the phylum boundary and the affiliation of previously ambiguous groupings. Here we define the Armatimonadetes as 10 class-level groups and reclassify two previously associated groups as candidate divisions WS1 and FBP.

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Year:  2013        PMID： 23377935      PMCID： PMC3623213          DOI： 10.1128/AEM.03333-12

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  14 in total

1.  A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data.

Authors:  D Dalevi; P Hugenholtz; L L Blackall
Journal:  Int J Syst Evol Microbiol       Date:  2001-03       Impact factor: 2.747

2.  Electing a candidate: a speculative history of the bacterial phylum OP10.

Authors:  Peter F Dunfield; Ivica Tamas; Kevin C Lee; Xochitl C Morgan; Ian R McDonald; Matthew B Stott
Journal:  Environ Microbiol       Date:  2012-04-13       Impact factor: 5.491

3.  Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses.

Authors:  Pablo Yarza; Wolfgang Ludwig; Jean Euzéby; Rudolf Amann; Karl-Heinz Schleifer; Frank Oliver Glöckner; Ramon Rosselló-Móra
Journal:  Syst Appl Microbiol       Date:  2010-10       Impact factor: 4.022

4.  A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.

Authors:  Jörg Peplies; Renzo Kottmann; Wolfgang Ludwig; Frank Oliver Glöckner
Journal:  Syst Appl Microbiol       Date:  2008-09-10       Impact factor: 4.022

Review 5.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

6.  Novel division level bacterial diversity in a Yellowstone hot spring.

Authors:  P Hugenholtz; C Pitulle; K L Hershberger; N R Pace
Journal:  J Bacteriol       Date:  1998-01       Impact factor: 3.490

7.  Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10.

Authors:  Hideyuki Tamaki; Yasuhiro Tanaka; Hiroaki Matsuzawa; Mizuho Muramatsu; Xian-Ying Meng; Satoshi Hanada; Kazuhiro Mori; Yoichi Kamagata
Journal:  Int J Syst Evol Microbiol       Date:  2010-07-09       Impact factor: 2.747

8.  Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica.

Authors:  José R de la Torre; Brett M Goebel; E Imre Friedmann; Norman R Pace
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

9.  Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation.

Authors:  M A Dojka; P Hugenholtz; S K Haack; N R Pace
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

10.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792
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  8 in total

Review 1.  Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.

Authors:  Pablo Yarza; Pelin Yilmaz; Elmar Pruesse; Frank Oliver Glöckner; Wolfgang Ludwig; Karl-Heinz Schleifer; William B Whitman; Jean Euzéby; Rudolf Amann; Ramon Rosselló-Móra
Journal:  Nat Rev Microbiol       Date:  2014-09       Impact factor: 60.633

2.  Atmospheric trace gases support primary production in Antarctic desert surface soil.

Authors:  Mukan Ji; Chris Greening; Inka Vanwonterghem; Carlo R Carere; Sean K Bay; Jason A Steen; Kate Montgomery; Thomas Lines; John Beardall; Josie van Dorst; Ian Snape; Matthew B Stott; Philip Hugenholtz; Belinda C Ferrari
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

3.  Exploring the microbiota dynamics related to vegetable biomasses degradation and study of lignocellulose-degrading bacteria for industrial biotechnological application.

Authors:  Valeria Ventorino; Alberto Aliberti; Vincenza Faraco; Alessandro Robertiello; Simona Giacobbe; Danilo Ercolini; Antonella Amore; Massimo Fagnano; Olimpia Pepe
Journal:  Sci Rep       Date:  2015-02-02       Impact factor: 4.379

4.  The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing.

Authors:  Vera Thiel; Jason M Wood; Millie T Olsen; Marcus Tank; Christian G Klatt; David M Ward; Donald A Bryant
Journal:  Front Microbiol       Date:  2016-06-17       Impact factor: 5.640

5.  Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the candidate division FBP.

Authors:  Kazuki Kobayashi; Hideki Aoyagi
Journal:  PeerJ       Date:  2019-10-29       Impact factor: 2.984

6.  The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Authors:  Kevin C Lee; Matthew B Stott; Peter F Dunfield; Curtis Huttenhower; Ian R McDonald; Xochitl C Morgan
Journal:  Appl Environ Microbiol       Date:  2016-05-31       Impact factor: 4.792

7.  Microbial Community and Biochemical Dynamics of Biological Soil Crusts across a Gradient of Surface Coverage in the Central Mojave Desert.

Authors:  Rakesh Mogul; Parag Vaishampayan; Mina Bashir; Chris P McKay; Keith Schubert; Rosalba Bornaccorsi; Ernesto Gomez; Sneha Tharayil; Geoffrey Payton; Juliana Capra; Jessica Andaya; Leonard Bacon; Emily Bargoma; David Black; Katie Boos; Michaela Brant; Michael Chabot; Danny Chau; Jessica Cisneros; Geoff Chu; Jane Curnutt; Jessica DiMizio; Christian Engelbrecht; Caroline Gott; Raechel Harnoto; Ruben Hovanesian; Shane Johnson; Britne Lavergne; Gabriel Martinez; Paul Mans; Ernesto Morales; Alex Oei; Gary Peplow; Ryan Piaget; Nicole Ponce; Eduardo Renteria; Veronica Rodriguez; Joseph Rodriguez; Monica Santander; Khamille Sarmiento; Allison Scheppelmann; Gavin Schroter; Devan Sexton; Jenin Stephenson; Kristin Symer; Tatiane Russo-Tait; Bill Weigel; Mary B Wilhelm
Journal:  Front Microbiol       Date:  2017-10-23       Impact factor: 5.640

8.  The haybiome: Characterising the viable bacterial community profile of four different hays for horses following different pre-feeding regimens.

Authors:  Simon Daniels; Jacob Hepworth; Meriel Moore-Colyer
Journal:  PLoS One       Date:  2020-11-17       Impact factor: 3.240
  8 in total

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