Literature DB >> 20622056

Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10.

Hideyuki Tamaki1, Yasuhiro Tanaka2, Hiroaki Matsuzawa2, Mizuho Muramatsu1, Xian-Ying Meng1, Satoshi Hanada1, Kazuhiro Mori2, Yoichi Kamagata3,1.   

Abstract

A novel aerobic, chemoheterotrophic bacterium, strain YO-36(T), isolated from the rhizoplane of an aquatic plant (a reed, Phragmites australis) inhabiting a freshwater lake in Japan, was morphologically, physiologically and phylogenetically characterized. Strain YO-36(T) was Gram-negative and ovoid to rod-shaped, and formed pinkish hard colonies on agar plates. Strain YO-36(T) grew at 20-40 °C with optimum growth at 30-35 °C, whilst no growth was observed at 15 °C or 45 °C. The pH range for growth was 5.5-8.5 with an optimum at pH 6.5. Strain YO-36(T) utilized a limited range of substrates, such as sucrose, gentiobiose, pectin, gellan gum and xanthan gum. The strain contained C(16 : 0), C(16 : 1), C(14 : 0) and C(15 : 0) as the major cellular fatty acids and menaquinone-12 as the respiratory quinone. The G+C content of the genomic DNA was 62.4 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain YO-36(T) belonged to the candidate phylum OP10 comprised solely of environmental 16S rRNA gene clone sequences except for two strains, P488 and T49 isolated from geothermal soil in New Zealand; strain YO-36(T) showed less than 80 % sequence similarity to strains P488 and T47. Based on the phylogetic and phenotypic findings, a new genus and species, Armatimonas rosea gen. nov., sp. nov., is proposed for the isolate (type strain YO-36(T)  = NBRC 105658(T)  = DSM 23562(T)). In addition, a new bacterial phylum named Armatimonadetes phyl. nov. is proposed for the candidate phylum OP10 represented by A. rosea gen. nov., sp. nov. and Armatimonadaceae fam. nov., Armatimonadales ord. nov., and Armatimonadia classis nov.

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Year:  2010        PMID: 20622056     DOI: 10.1099/ijs.0.025643-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  38 in total

1.  Candidate OP Phyla: Importance, Ecology and Cultivation Prospects.

Authors:  M Rohini Kumar; V S Saravanan
Journal:  Indian J Microbiol       Date:  2011-01-25       Impact factor: 2.461

2.  Prevalence of a novel division-level bacterial lineage in Lake Dhanmondi, Dhaka, Bangladesh, as revealed by deep sequencing of 16S rRNA gene amplicons.

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Journal:  Curr Microbiol       Date:  2012-06-17       Impact factor: 2.188

3.  Insights into the phylogeny and coding potential of microbial dark matter.

Authors:  Christian Rinke; Patrick Schwientek; Alexander Sczyrba; Natalia N Ivanova; Iain J Anderson; Jan-Fang Cheng; Aaron Darling; Stephanie Malfatti; Brandon K Swan; Esther A Gies; Jeremy A Dodsworth; Brian P Hedlund; George Tsiamis; Stefan M Sievert; Wen-Tso Liu; Jonathan A Eisen; Steven J Hallam; Nikos C Kyrpides; Ramunas Stepanauskas; Edward M Rubin; Philip Hugenholtz; Tanja Woyke
Journal:  Nature       Date:  2013-07-14       Impact factor: 49.962

4.  Impact of soil salinity on the microbial structure of halophyte rhizosphere microbiome.

Authors:  Salma Mukhtar; Babur Saeed Mirza; Samina Mehnaz; Muhammad Sajjad Mirza; Joan Mclean; Kauser Abdulla Malik
Journal:  World J Microbiol Biotechnol       Date:  2018-08-20       Impact factor: 3.312

5.  The prokaryotic community of a historically mining-impacted tropical stream sediment is as diverse as that from a pristine stream sediment.

Authors:  Mariana P Reis; Francisco A R Barbosa; Edmar Chartone-Souza; Andréa M A Nascimento
Journal:  Extremophiles       Date:  2013-02-07       Impact factor: 2.395

6.  Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Authors:  K C Y Lee; C W Herbold; P F Dunfield; X C Morgan; I R McDonald; M B Stott
Journal:  Appl Environ Microbiol       Date:  2013-02-01       Impact factor: 4.792

7.  Bacterial distribution along a 50 °C temperature gradient reveals a parceled out hot spring environment.

Authors:  A Cuecas; M C Portillo; W Kanoksilapatham; J M Gonzalez
Journal:  Microb Ecol       Date:  2014-06-03       Impact factor: 4.552

8.  Illumina-based analysis of the rhizosphere microbial communities associated with healthy and wilted Lanzhou lily (Lilium davidii var. unicolor) plants grown in the field.

Authors:  Qianhan Shang; Guo Yang; Yun Wang; Xiukun Wu; Xia Zhao; Haiting Hao; Yuyao Li; Zhongkui Xie; Yubao Zhang; Ruoyu Wang
Journal:  World J Microbiol Biotechnol       Date:  2016-04-27       Impact factor: 3.312

Review 9.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

10.  An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile.

Authors:  Matthew Miezeiewski; Todd Schnaufer; Michele Muravsky; Su Wang; Ivette Caro-Aguilar; Susan Secore; David S Thiriot; Charlie Hsu; Irene Rogers; Todd DeSantis; Justin Kuczynski; Alexander J Probst; Christel Chehoud; Rachel Steger; Janet Warrington; Jean-Luc Bodmer; Jon H Heinrichs
Journal:  ISME J       Date:  2014-07-18       Impact factor: 10.302

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