Literature DB >> 22497633

Electing a candidate: a speculative history of the bacterial phylum OP10.

Peter F Dunfield1, Ivica Tamas, Kevin C Lee, Xochitl C Morgan, Ian R McDonald, Matthew B Stott.   

Abstract

In 1998, a cultivation-independent survey of the microbial community in Obsidian Pool, Yellowstone National Park, detected 12 new phyla within the Domain Bacteria. These were dubbed 'candidate divisions' OP1 to OP12. Since that time the OP10 candidate division has been commonly detected in various environments, usually as part of the rare biosphere, but occasionally as a predominant community component. Based on 16S rRNA gene phylogeny, OP10 comprises at least 12 class-level subdivisions. However, despite this broad ecological and evolutionary diversity, all OP10 bacteria have eluded cultivation until recently. In 2011, two reference species of OP10 were taxonomically validated, removing the phylum from its 'candidate' status. Construction of a highly resolved phylogeny based on 29 universally conserved genes verifies its standing as a unique bacterial phylum. In the following paper we summarize what is known and what is suspected about the newest described bacterial phylum, the Armatimonadetes.
© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.

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Year:  2012        PMID: 22497633     DOI: 10.1111/j.1462-2920.2012.02742.x

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  13 in total

1.  Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil.

Authors:  Xiaoqing Wang; Christine E Sharp; Gareth M Jones; Stephen E Grasby; Allyson L Brady; Peter F Dunfield
Journal:  Appl Environ Microbiol       Date:  2015-05-01       Impact factor: 4.792

2.  Microbial community analysis of pH 4 thermal springs in Yellowstone National Park.

Authors:  Xiaoben Jiang; Cristina D Takacs-Vesbach
Journal:  Extremophiles       Date:  2016-11-02       Impact factor: 2.395

3.  Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Authors:  K C Y Lee; C W Herbold; P F Dunfield; X C Morgan; I R McDonald; M B Stott
Journal:  Appl Environ Microbiol       Date:  2013-02-01       Impact factor: 4.792

4.  Humboldt's spa: microbial diversity is controlled by temperature in geothermal environments.

Authors:  Christine E Sharp; Allyson L Brady; Glen H Sharp; Stephen E Grasby; Matthew B Stott; Peter F Dunfield
Journal:  ISME J       Date:  2014-01-16       Impact factor: 10.302

5.  Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

Authors:  Tatiana A Vishnivetskaya; Scott D Hamilton-Brehm; Mircea Podar; Jennifer J Mosher; Anthony V Palumbo; Tommy J Phelps; Martin Keller; James G Elkins
Journal:  Microb Ecol       Date:  2014-10-16       Impact factor: 4.552

6.  Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Authors:  Kevin C-Y Lee; Xochitl C Morgan; Peter F Dunfield; Ivica Tamas; Ian R McDonald; Matthew B Stott
Journal:  ISME J       Date:  2014-01-30       Impact factor: 10.302

7.  Exploring the microbiota dynamics related to vegetable biomasses degradation and study of lignocellulose-degrading bacteria for industrial biotechnological application.

Authors:  Valeria Ventorino; Alberto Aliberti; Vincenza Faraco; Alessandro Robertiello; Simona Giacobbe; Danilo Ercolini; Antonella Amore; Massimo Fagnano; Olimpia Pepe
Journal:  Sci Rep       Date:  2015-02-02       Impact factor: 4.379

8.  The first complete genome sequence of the class Fimbriimonadia in the phylum Armatimonadetes.

Authors:  Zi-Ye Hu; Yue-Zhu Wang; Wan-Taek Im; Sheng-Yue Wang; Guo-Ping Zhao; Hua-Jun Zheng; Zhe-Xue Quan
Journal:  PLoS One       Date:  2014-06-26       Impact factor: 3.240

9.  The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Authors:  Kevin C Lee; Matthew B Stott; Peter F Dunfield; Curtis Huttenhower; Ian R McDonald; Xochitl C Morgan
Journal:  Appl Environ Microbiol       Date:  2016-05-31       Impact factor: 4.792

10.  Draft Genome Sequences of Two Uncultured Armatimonadetes Associated with a Microcystis sp. (Cyanobacteria) Isolate.

Authors:  Jason N Woodhouse; A Katharina Makower; Hans-Peter Grossart; Elke Dittmann
Journal:  Genome Announc       Date:  2017-10-05
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