Literature DB >> 23376637

Beyond microRNA--novel RNAs derived from small non-coding RNA and their implication in cancer.

Elena S Martens-Uzunova1, Michael Olvedy, Guido Jenster.   

Abstract

Over the recent years, Next Generation Sequencing (NGS) technologies targeting the microRNA transcriptome revealed the existence of many different RNA fragments derived from small RNA species other than microRNA. Although initially discarded as RNA turnover artifacts, accumulating evidence suggests that RNA fragments derived from small nucleolar RNA (snoRNA) and transfer RNA (tRNA) are not just random degradation products but rather stable entities, which may have functional activity in the normal and malignant cell. This review summarizes new findings describing the detection and alterations in expression of snoRNA-derived (sdRNA) and tRNA-derived (tRF) RNAs. We focus on the possible interactions of sdRNAs and tRFs with the canonical microRNA pathways in the cell and present current hypotheses on the function of these RNAs.
Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Entities:  

Keywords:  Cancer; Next generation sequencing; Non-coding RNA; microRNA; snoRNA-derived RNA (sdRNA); tRNA fragment (tRF)

Mesh:

Substances:

Year:  2013        PMID: 23376637     DOI: 10.1016/j.canlet.2012.11.058

Source DB:  PubMed          Journal:  Cancer Lett        ISSN: 0304-3835            Impact factor:   8.679


  78 in total

Review 1.  Transfer RNA-derived fragments and tRNA halves: biogenesis, biological functions and their roles in diseases.

Authors:  Yijing Shen; Xiuchong Yu; Linwen Zhu; Tianwen Li; Zhilong Yan; Junming Guo
Journal:  J Mol Med (Berl)       Date:  2018-09-19       Impact factor: 4.599

2.  Isolation of High-density Lipoproteins for Non-coding Small RNA Quantification.

Authors:  Danielle L Michell; Ryan M Allen; Stuart R Landstreet; Shilin Zhao; Cynthia L Toth; Quanhu Sheng; Kasey C Vickers
Journal:  J Vis Exp       Date:  2016-11-28       Impact factor: 1.355

Review 3.  Single molecule fluorescence approaches shed light on intracellular RNAs.

Authors:  Sethuramasundaram Pitchiaya; Laurie A Heinicke; Thomas C Custer; Nils G Walter
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

4.  Plasma MicroRNA signature predicting weight gain among Mexican-American women.

Authors:  Hua Zhao; Jie Shen; Carrie Daniel-MacDougall; Xifeng Wu; Wong-Ho Chow
Journal:  Obesity (Silver Spring)       Date:  2017-03-25       Impact factor: 5.002

5.  Emerging roles of novel small non-coding regulatory RNAs in immunity and cancer.

Authors:  Domenico Rosace; Judith López; Sandra Blanco
Journal:  RNA Biol       Date:  2020-03-18       Impact factor: 4.652

6.  Small noncoding RNAs in FSHD2 muscle cells reveal both DUX4- and SMCHD1-specific signatures.

Authors:  Jong-Won Lim; Chao-Jen Wong; Zizhen Yao; Rabi Tawil; Silvère M van der Maarel; Daniel G Miller; Stephen J Tapscott; Galina N Filippova
Journal:  Hum Mol Genet       Date:  2018-08-01       Impact factor: 6.150

7.  Inferring targeting modes of Argonaute-loaded tRNA fragments.

Authors:  Lingyu Guan; Spyros Karaiskos; Andrey Grigoriev
Journal:  RNA Biol       Date:  2019-10-15       Impact factor: 4.652

8.  Multiple information carried by RNAs: total eclipse or a light at the end of the tunnel?

Authors:  Baptiste Bogard; Claire Francastel; Florent Hubé
Journal:  RNA Biol       Date:  2020-06-26       Impact factor: 4.652

9.  Decoding the noncoding transcripts in human heart failure.

Authors:  Xinshu Grace Xiao; Marlin Touma; Yibin Wang
Journal:  Circulation       Date:  2014-01-15       Impact factor: 29.690

Review 10.  An updated review of gastric cancer in the next-generation sequencing era: insights from bench to bedside and vice versa.

Authors:  Hiroyuki Yamamoto; Yoshiyuki Watanabe; Tadateru Maehata; Ryo Morita; Yoshihito Yoshida; Ritsuko Oikawa; Shinya Ishigooka; Shun-Ichiro Ozawa; Yasumasa Matsuo; Kosuke Hosoya; Masaki Yamashita; Hiroaki Taniguchi; Katsuhiko Nosho; Hiromu Suzuki; Hiroshi Yasuda; Yasuhisa Shinomura; Fumio Itoh
Journal:  World J Gastroenterol       Date:  2014-04-14       Impact factor: 5.742

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