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Literature DB >> 24417544

Single molecule fluorescence approaches shed light on intracellular RNAs.

Sethuramasundaram Pitchiaya¹, Laurie A Heinicke, Thomas C Custer, Nils G Walter.

Abstract

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Year: 2014 PMID： 24417544 PMCID： PMC3968247 DOI： 10.1021/cr400496q

Source DB: PubMed Journal: Chem Rev ISSN： 0009-2665 Impact factor: 60.622

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489 in total

1. Regulation of noise in the expression of a single gene.

Authors: Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal: Nat Genet Date: 2002-04-22 Impact factor: 38.330

2. Binding to an RNA aptamer changes the charge distribution and conformation of malachite green.

Authors: Dat H Nguyen; Steven C DeFina; William H Fink; Thorsten Dieckmann
Journal: J Am Chem Soc Date: 2002-12-18 Impact factor: 15.419

Review 3. The widespread regulation of microRNA biogenesis, function and decay.

Authors: Jacek Krol; Inga Loedige; Witold Filipowicz
Journal: Nat Rev Genet Date: 2010-07-27 Impact factor: 53.242

4. From alpaca to zebrafish: hammerhead ribozymes wherever you look.

Authors: Carsten Seehafer; Anne Kalweit; Gerhard Steger; Stefan Gräf; Christian Hammann
Journal: RNA Date: 2010-11-16 Impact factor: 4.942

Review 5. Three-dimensional particle tracking via bifocal imaging.

Authors: Erdal Toprak; Hamza Balci; Benjamin H Blehm; Paul R Selvin
Journal: Nano Lett Date: 2007-06-21 Impact factor: 11.189

Review 6. Execution of nonsense-mediated mRNA decay: what defines a substrate?

Authors: Indrani Rebbapragada; Jens Lykke-Andersen
Journal: Curr Opin Cell Biol Date: 2009-04-07 Impact factor: 8.382

7. Single-molecule transcript counting of stem-cell markers in the mouse intestine.

Authors: Shalev Itzkovitz; Anna Lyubimova; Irene C Blat; Mindy Maynard; Johan van Es; Jacqueline Lees; Tyler Jacks; Hans Clevers; Alexander van Oudenaarden
Journal: Nat Cell Biol Date: 2011-11-27 Impact factor: 28.824

Review 8. Nuclear export dynamics of RNA-protein complexes.

Authors: David Grünwald; Robert H Singer; Michael Rout
Journal: Nature Date: 2011-07-20 Impact factor: 49.962

9. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

Authors: Aleksandra Helwak; Grzegorz Kudla; Tatiana Dudnakova; David Tollervey
Journal: Cell Date: 2013-04-25 Impact factor: 41.582

10. Identification of human miRNA precursors that resemble box C/D snoRNAs.

Authors: Motoharu Ono; Michelle S Scott; Kayo Yamada; Fabio Avolio; Geoffrey J Barton; Angus I Lamond
Journal: Nucleic Acids Res Date: 2011-01-18 Impact factor: 16.971

28 in total

1. A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells.

Authors: Esther Braselmann; Amy E Palmer
Journal: Methods Enzymol Date: 2020-04-13 Impact factor: 1.600

2. Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.

Authors: Yu Liu; Erik Holmstrom; Ping Yu; Kemin Tan; Xiaobing Zuo; David J Nesbitt; Rui Sousa; Jason R Stagno; Yun-Xing Wang
Journal: Nat Protoc Date: 2018-04-12 Impact factor: 13.491

Review 10. Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors: Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal: Wiley Interdiscip Rev RNA Date: 2016-05-20 Impact factor: 9.957

Single molecule fluorescence approaches shed light on intracellular RNAs.

1. Regulation of noise in the expression of a single gene.

2. Binding to an RNA aptamer changes the charge distribution and conformation of malachite green.

Review 3. The widespread regulation of microRNA biogenesis, function and decay.

4. From alpaca to zebrafish: hammerhead ribozymes wherever you look.

Review 5. Three-dimensional particle tracking via bifocal imaging.

Review 6. Execution of nonsense-mediated mRNA decay: what defines a substrate?

7. Single-molecule transcript counting of stem-cell markers in the mouse intestine.

Review 8. Nuclear export dynamics of RNA-protein complexes.

9. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.

10. Identification of human miRNA precursors that resemble box C/D snoRNAs.

1. A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells.

2. Incorporation of isotopic, fluorescent, and heavy-atom-modified nucleotides into RNAs by position-selective labeling of RNA.

3. Single-molecule spectroscopy of protein conformational dynamics in live eukaryotic cells.

4. In vitro labeling strategies for in cellulo fluorescence microscopy of single ribonucleoprotein machines.

5. Single-Molecule Pull-Down FRET to Dissect the Mechanisms of Biomolecular Machines.

Review 6. Tracking single molecules at work in living cells.

Review 7. Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

8. A Novel Method to Quantify RNA-Protein Interactions In Situ Using FMTRIP and Proximity Ligation.

9. In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria.

Review 10. Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.