Literature DB >> 23375955

Quality control mechanisms during ribosome maturation.

Katrin Karbstein1.   

Abstract

Protein synthesis on ribosomes is carefully quality-controlled to ensure the faithful transmission of genetic information from mRNA to protein. Many of these mechanisms rely on communication between distant sites on the ribosomes, and thus on the integrity of the ribosome structure. Furthermore, haploinsufficiency of ribosomal proteins, which increases the chances of forming incompletely assembled ribosomes, can predispose to cancer. Finally, release of inactive ribosomes into the translating pool will lead to their degradation together with the degradation of the bound mRNA. Together, these findings suggest that quality control mechanisms must be in place to survey nascent ribosomes and ensure their functionality. This review gives an account of these mechanisms as currently known.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23375955      PMCID: PMC3640646          DOI: 10.1016/j.tcb.2013.01.004

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  103 in total

1.  Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.

Authors:  Bethany S Strunk; Cherisse R Loucks; Min Su; Harish Vashisth; Shanshan Cheng; Justin Schilling; Charles L Brooks; Katrin Karbstein; Georgios Skiniotis
Journal:  Science       Date:  2011-08-11       Impact factor: 47.728

2.  Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.

Authors:  Thomas Becker; Jean-Paul Armache; Alexander Jarasch; Andreas M Anger; Elizabeth Villa; Heidemarie Sieber; Basma Abdel Motaal; Thorsten Mielke; Otto Berninghausen; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2011-05-29       Impact factor: 15.369

3.  The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3' end of 16S rRNA.

Authors:  Chao Tu; Xiaomei Zhou; Sergey G Tarasov; Joseph E Tropea; Brian P Austin; David S Waugh; Donald L Court; Xinhua Ji
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-06       Impact factor: 11.205

Review 4.  Assembly of bacterial ribosomes.

Authors:  Zahra Shajani; Michael T Sykes; James R Williamson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

5.  Rcl1 protein, a novel nuclease for 18 S ribosomal RNA production.

Authors:  Darryl M Horn; Saundra L Mason; Katrin Karbstein
Journal:  J Biol Chem       Date:  2011-08-17       Impact factor: 5.157

6.  Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes.

Authors:  Vera P Pisareva; Maxim A Skabkin; Christopher U T Hellen; Tatyana V Pestova; Andrey V Pisarev
Journal:  EMBO J       Date:  2011-03-29       Impact factor: 11.598

7.  Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.

Authors:  Aarti Sahasranaman; Jill Dembowski; John Strahler; Philip Andrews; Janine Maddock; John L Woolford
Journal:  EMBO J       Date:  2011-09-16       Impact factor: 11.598

Review 8.  The cancerous translation apparatus.

Authors:  Craig R Stumpf; Davide Ruggero
Journal:  Curr Opin Genet Dev       Date:  2011-05-03       Impact factor: 5.578

Review 9.  Non-Diamond Blackfan anemia disorders of ribosome function: Shwachman Diamond syndrome and 5q- syndrome.

Authors:  Nicholas Burwick; Akiko Shimamura; Johnson M Liu
Journal:  Semin Hematol       Date:  2011-04       Impact factor: 3.851

10.  A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease.

Authors:  Sander Granneman; Elisabeth Petfalski; David Tollervey
Journal:  EMBO J       Date:  2011-08-02       Impact factor: 11.598

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  66 in total

1.  Chemical modulators of ribosome biogenesis as biological probes.

Authors:  Jonathan M Stokes; Eric D Brown
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

2.  Protein synthesis by ribosomes with tethered subunits.

Authors:  Cédric Orelle; Erik D Carlson; Teresa Szal; Tanja Florin; Michael C Jewett; Alexander S Mankin
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

Review 3.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

4.  Monosome formation during translation initiation requires the serine/arginine-rich protein Npl3.

Authors:  Claudia Baierlein; Alexandra Hackmann; Thomas Gross; Lysann Henker; Frederik Hinz; Heike Krebber
Journal:  Mol Cell Biol       Date:  2013-10-07       Impact factor: 4.272

5.  In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state.

Authors:  Jennifer L McGinnis; Qi Liu; Christopher A Lavender; Aishwarya Devaraj; Sean P McClory; Kurt Fredrick; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

6.  Fluorescence bimolecular complementation enables facile detection of ribosome assembly defects in Escherichia coli.

Authors:  Himanshu Sharma; Baskaran Anand
Journal:  RNA Biol       Date:  2016-07-07       Impact factor: 4.652

7.  uORF-seqr: A Machine Learning-Based Approach to the Identification of Upstream Open Reading Frames in Yeast.

Authors:  Pieter Spealman; Armaghan Naik; Joel McManus
Journal:  Methods Mol Biol       Date:  2021

8.  The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly.

Authors:  Aida Razi; Alba Guarné; Joaquin Ortega
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-10       Impact factor: 11.205

9.  Final touches and quality control on the assembly of the eukaryotic ribosome.

Authors:  Aida Razi; Joaquin Ortega
Journal:  EMBO J       Date:  2017-03-13       Impact factor: 11.598

10.  Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Authors:  Olga Rodríguez-Galán; Juan J García-Gómez; Dieter Kressler; Jesús de la Cruz
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

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