Literature DB >> 21926967

Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.

Aarti Sahasranaman1, Jill Dembowski, John Strahler, Philip Andrews, Janine Maddock, John L Woolford.   

Abstract

The precise functions of most of the ∼200 assembly factors and 79 ribosomal proteins required to construct yeast ribosomes in vivo remain largely unexplored. To better understand the roles of these proteins and the mechanisms driving ribosome biogenesis, we examined in detail one step in 60S ribosomal subunit assembly-processing of 27SA(3) pre-rRNA. Six of seven assembly factors required for this step (A(3) factors) are mutually interdependent for association with preribosomes. These A(3) factors are required to recruit Rrp17, one of three exonucleases required for this processing step. In the absence of A(3) factors, four ribosomal proteins adjacent to each other, rpL17, rpL26, rpL35, and rpL37, fail to assemble, and preribosomes are turned over by Rat1. We conclude that formation of a neighbourhood in preribosomes containing the A(3) factors establishes and maintains stability of functional preribosomes containing 27S pre-rRNAs. In the absence of these assembly factors, at least one exonuclease can switch from processing to turnover of pre-rRNA.

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Year:  2011        PMID: 21926967      PMCID: PMC3209790          DOI: 10.1038/emboj.2011.338

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  51 in total

1.  Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.

Authors:  C Saveanu; D Bienvenu; A Namane; P E Gleizes; N Gas; A Jacquier; M Fromont-Racine
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

2.  Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis.

Authors:  F Burger; M C Daugeron; P Linder
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

3.  Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits.

Authors:  Cynthia C Adams; Jelena Jakovljevic; Judibelle Roman; Piyanun Harnpicharnchai; John L Woolford
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

4.  ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs.

Authors:  D G Pestov; M G Stockelman; Z Strezoska; L F Lau
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

5.  The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases.

Authors:  T H Geerlings; J C Vos; H A Raué
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

6.  Bop1 is a mouse WD40 repeat nucleolar protein involved in 28S and 5. 8S RRNA processing and 60S ribosome biogenesis.

Authors:  Z Strezoska; D G Pestov; L F Lau
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

7.  A nucleolar protein related to ribosomal protein L7 is required for an early step in large ribosomal subunit biogenesis.

Authors:  D A Dunbar; F Dragon; S J Lee; S J Baserga
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

8.  Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis.

Authors:  Marlene Oeffinger; Anthony Leung; Angus Lamond; David Tollervey; Anthony Lueng
Journal:  RNA       Date:  2002-05       Impact factor: 4.942

9.  Identification of a role for Saccharomyces cerevisiae Cgr1p in pre-rRNA processing and 60S ribosome subunit synthesis.

Authors:  Terence I Moy; Douglas Boettner; Judith C Rhodes; Pamela A Silver; David S Askew
Journal:  Microbiology (Reading)       Date:  2002-04       Impact factor: 2.777

10.  A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease.

Authors:  Sander Granneman; Elisabeth Petfalski; David Tollervey
Journal:  EMBO J       Date:  2011-08-02       Impact factor: 11.598

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  59 in total

Review 1.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

2.  Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits.

Authors:  Jelena Jakovljevic; Uli Ohmayer; Michael Gamalinda; Jason Talkish; Lisa Alexander; Jan Linnemann; Philipp Milkereit; John L Woolford
Journal:  RNA       Date:  2012-08-14       Impact factor: 4.942

3.  NOL12 Repression Induces Nucleolar Stress-Driven Cellular Senescence and Is Associated with Normative Aging.

Authors:  Elsa Logarinho; Paulo S Pereira; Marta Pinho; Joana C Macedo
Journal:  Mol Cell Biol       Date:  2019-05-28       Impact factor: 4.272

4.  Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  Jason Talkish; Ian Winsten Campbell; Aarti Sahasranaman; Jelena Jakovljevic; John L Woolford
Journal:  Mol Cell Biol       Date:  2014-03-17       Impact factor: 4.272

Review 5.  Nuclear noncoding RNA surveillance: is the end in sight?

Authors:  Sandra L Wolin; Soyeong Sim; Xinguo Chen
Journal:  Trends Genet       Date:  2012-04-02       Impact factor: 11.639

Review 6.  Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Authors:  Salini Konikkat; John L Woolford
Journal:  Biochem J       Date:  2017-01-15       Impact factor: 3.857

Review 7.  Disordered proteinaceous machines.

Authors:  Monika Fuxreiter; Ágnes Tóth-Petróczy; Daniel A Kraut; Andreas Matouschek; Andreas T Matouschek; Roderick Y H Lim; Bin Xue; Lukasz Kurgan; Vladimir N Uversky
Journal:  Chem Rev       Date:  2014-04-04       Impact factor: 60.622

8.  Yeast ribosomal protein L40 assembles late into precursor 60 S ribosomes and is required for their cytoplasmic maturation.

Authors:  Antonio Fernández-Pevida; Olga Rodríguez-Galán; Antonio Díaz-Quintana; Dieter Kressler; Jesús de la Cruz
Journal:  J Biol Chem       Date:  2012-09-20       Impact factor: 5.157

Review 9.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

Review 10.  Quality control mechanisms during ribosome maturation.

Authors:  Katrin Karbstein
Journal:  Trends Cell Biol       Date:  2013-02-01       Impact factor: 20.808

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