Literature DB >> 23375499

Topoisomerase 1-mediated removal of ribonucleotides from nascent leading-strand DNA.

Jessica S Williams1, Dana J Smith, Lisette Marjavaara, Scott A Lujan, Andrei Chabes, Thomas A Kunkel.   

Abstract

RNase H2-dependent ribonucleotide excision repair (RER) removes ribonucleotides incorporated during DNA replication. When RER is defective, ribonucleotides in the nascent leading strand of the yeast genome are associated with replication stress and genome instability. Here, we provide evidence that topoisomerase 1 (Top1) initiates an independent form of repair to remove ribonucleotides from genomic DNA. This Top1-dependent process activates the S phase checkpoint. Deleting TOP1 reverses this checkpoint activation and also relieves replication stress and genome instability in RER-defective cells. The results reveal an additional removal pathway for a very common lesion in DNA, and they imply that the "dirty" DNA ends created when Top1 incises ribonucleotides in DNA are responsible for the adverse consequences of ribonucleotides in RNase H2-defective cells.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23375499      PMCID: PMC3595360          DOI: 10.1016/j.molcel.2012.12.021

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  33 in total

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Journal:  Nat Struct Biol       Date:  2000-03

Review 2.  Cellular roles of DNA topoisomerases: a molecular perspective.

Authors:  James C Wang
Journal:  Nat Rev Mol Cell Biol       Date:  2002-06       Impact factor: 94.444

3.  Mutational spectrum analysis of RNase H(35) deficient Saccharomyces cerevisiae using fluorescence-based directed termination PCR.

Authors:  J Z Chen; J Qiu; B Shen; G P Holmquist
Journal:  Nucleic Acids Res       Date:  2000-09-15       Impact factor: 16.971

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Authors:  C M Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

5.  Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts.

Authors:  Bjorn Rydberg; John Game
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-10       Impact factor: 11.205

6.  Substrate specificity of human RNase H1 and its role in excision repair of ribose residues misincorporated in DNA.

Authors:  P S Eder; R Y Walder; J A Walder
Journal:  Biochimie       Date:  1993       Impact factor: 4.079

7.  An alkylation-tolerant, mutator human cell line is deficient in strand-specific mismatch repair.

Authors:  A Kat; W G Thilly; W H Fang; M J Longley; G M Li; P Modrich
Journal:  Proc Natl Acad Sci U S A       Date:  1993-07-15       Impact factor: 11.205

8.  Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease.

Authors:  J Qiu; Y Qian; P Frank; U Wintersberger; B Shen
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

9.  Ribonuclease H from K562 human erythroleukemia cells. Purification, characterization, and substrate specificity.

Authors:  P S Eder; J A Walder
Journal:  J Biol Chem       Date:  1991-04-05       Impact factor: 5.157

10.  Exonuclease 1 preferentially repairs mismatches generated by DNA polymerase α.

Authors:  Sascha E Liberti; Andres A Larrea; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2012-12-11
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  84 in total

1.  Stimulation of Chromosomal Rearrangements by Ribonucleotides.

Authors:  Hailey N Conover; Scott A Lujan; Mary J Chapman; Deborah A Cornelio; Rabab Sharif; Jessica S Williams; Alan B Clark; Francheska Camilo; Thomas A Kunkel; Juan Lucas Argueso
Journal:  Genetics       Date:  2015-09-22       Impact factor: 4.562

2.  Roles of DNA helicases and Exo1 in the avoidance of mutations induced by Top1-mediated cleavage at ribonucleotides in DNA.

Authors:  Hengyao Niu; Catherine J Potenski; Anastasiya Epshtein; Patrick Sung; Hannah L Klein
Journal:  Cell Cycle       Date:  2015-12-30       Impact factor: 4.534

Review 3.  RNase H2-RED carpets the path to eukaryotic RNase H2 functions.

Authors:  Susana M Cerritelli; Robert J Crouch
Journal:  DNA Repair (Amst)       Date:  2019-10-23

4.  Impact of template backbone heterogeneity on RNA polymerase II transcription.

Authors:  Liang Xu; Wei Wang; Lu Zhang; Jenny Chong; Xuhui Huang; Dong Wang
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

5.  Ribonucleotide triggered DNA damage and RNA-DNA damage responses.

Authors:  Bret D Wallace; R Scott Williams
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

6.  Rewriting the rules for end joining via enzymatic splicing of DNA 3'-PO4 and 5'-OH ends.

Authors:  Ushati Das; Anupam K Chakravarty; Barbara S Remus; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

7.  Measuring ribonucleotide incorporation into DNA in vitro and in vivo.

Authors:  Anders R Clausen; Jessica S Williams; Thomas A Kunkel
Journal:  Methods Mol Biol       Date:  2015

8.  Impact of Ribonucleotide Backbone on Translesion Synthesis and Repair of 7,8-Dihydro-8-oxoguanine.

Authors:  Akira Sassa; Melike Çağlayan; Yesenia Rodriguez; William A Beard; Samuel H Wilson; Takehiko Nohmi; Masamitsu Honma; Manabu Yasui
Journal:  J Biol Chem       Date:  2016-09-22       Impact factor: 5.157

9.  Proteolytic degradation of topoisomerase II (Top2) enables the processing of Top2·DNA and Top2·RNA covalent complexes by tyrosyl-DNA-phosphodiesterase 2 (TDP2).

Authors:  Rui Gao; Matthew J Schellenberg; Shar-Yin N Huang; Monica Abdelmalak; Christophe Marchand; Karin C Nitiss; John L Nitiss; R Scott Williams; Yves Pommier
Journal:  J Biol Chem       Date:  2014-05-07       Impact factor: 5.157

10.  Analysis of Ribonucleotide Removal from DNA by Human Nucleotide Excision Repair.

Authors:  Laura A Lindsey-Boltz; Michael G Kemp; Jinchuan Hu; Aziz Sancar
Journal:  J Biol Chem       Date:  2015-10-21       Impact factor: 5.157

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