Literature DB >> 25692233

Ribonucleotide triggered DNA damage and RNA-DNA damage responses.

Bret D Wallace1, R Scott Williams.   

Abstract

Research indicates that the transient contamination of DNA with ribonucleotides exceeds all other known types of DNA damage combined. The consequences of ribose incorporation into DNA, and the identity of protein factors operating in this RNA-DNA realm to protect genomic integrity from RNA-triggered events are emerging. Left unrepaired, the presence of ribonucleotides in genomic DNA impacts cellular proliferation and is associated with chromosome instability, gross chromosomal rearrangements, mutagenesis, and production of previously unrecognized forms of ribonucleotide-triggered DNA damage. Here, we highlight recent findings on the nature and structure of DNA damage arising from ribonucleotides in DNA, and the identification of cellular factors acting in an RNA-DNA damage response (RDDR) to counter RNA-triggered DNA damage.

Entities:  

Keywords:  2′-3′-cyclic PO4; AOA1; Acardi-Goutieres syndrome; Aprataxin; Aptx; Ataxia Oculomotor Apraxia; DNA adenylation; DNA damage; DNA ligase; DNA repair; Flap Endonuclease 1 (FEN-1); Genome Stability; RNA-DNA damage; RNase H2; Ribonucleotide Excision Repair (RER); Top1cc, Topoisomerase 2 (Top2); Top2cc; Topoisomerase 1 (Top1); Tyrosyl-DNA phosphodiesterase 2 (Tdp2); abortive ligation

Mesh:

Substances:

Year:  2014        PMID: 25692233      PMCID: PMC4615641          DOI: 10.4161/15476286.2014.992283

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  56 in total

1.  Human flap endonuclease structures, DNA double-base flipping, and a unified understanding of the FEN1 superfamily.

Authors:  Susan E Tsutakawa; Scott Classen; Brian R Chapados; Andrew S Arvai; L David Finger; Grant Guenther; Christopher G Tomlinson; Peter Thompson; Altaf H Sarker; Binghui Shen; Priscilla K Cooper; Jane A Grasby; John A Tainer
Journal:  Cell       Date:  2011-04-15       Impact factor: 41.582

2.  Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I.

Authors:  Nayun Kim; Shar-yin N Huang; Jessica S Williams; Yue C Li; Alan B Clark; Jang-Eun Cho; Thomas A Kunkel; Yves Pommier; Sue Jinks-Robertson
Journal:  Science       Date:  2011-06-24       Impact factor: 47.728

3.  Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases.

Authors:  Stephanie A Nick McElhinny; Brian E Watts; Dinesh Kumar; Danielle L Watt; Else-Britt Lundström; Peter M J Burgers; Erik Johansson; Andrei Chabes; Thomas A Kunkel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

4.  Ribonucleotide discrimination and reverse transcription by the human mitochondrial DNA polymerase.

Authors:  Rajesh Kasiviswanathan; William C Copeland
Journal:  J Biol Chem       Date:  2011-07-21       Impact factor: 5.157

5.  Aprataxin, poly-ADP ribose polymerase 1 (PARP-1) and apurinic endonuclease 1 (APE1) function together to protect the genome against oxidative damage.

Authors:  Janelle L Harris; Burkhard Jakob; Gisela Taucher-Scholz; Grigory L Dianov; Olivier J Becherel; Martin F Lavin
Journal:  Hum Mol Genet       Date:  2009-07-30       Impact factor: 6.150

6.  A human 5'-tyrosyl DNA phosphodiesterase that repairs topoisomerase-mediated DNA damage.

Authors:  Felipe Cortes Ledesma; Sherif F El Khamisy; Maria C Zuma; Kay Osborn; Keith W Caldecott
Journal:  Nature       Date:  2009-10-01       Impact factor: 49.962

7.  Crystal structures of RNase H2 in complex with nucleic acid reveal the mechanism of RNA-DNA junction recognition and cleavage.

Authors:  Monika P Rychlik; Hyongi Chon; Susana M Cerritelli; Paulina Klimek; Robert J Crouch; Marcin Nowotny
Journal:  Mol Cell       Date:  2010-11-24       Impact factor: 17.970

8.  Genome instability due to ribonucleotide incorporation into DNA.

Authors:  Stephanie A Nick McElhinny; Dinesh Kumar; Alan B Clark; Danielle L Watt; Brian E Watts; Else-Britt Lundström; Erik Johansson; Andrei Chabes; Thomas A Kunkel
Journal:  Nat Chem Biol       Date:  2010-08-22       Impact factor: 15.040

9.  TDP2/TTRAP is the major 5'-tyrosyl DNA phosphodiesterase activity in vertebrate cells and is critical for cellular resistance to topoisomerase II-induced DNA damage.

Authors:  Zhihong Zeng; Felipe Cortés-Ledesma; Sherif F El Khamisy; Keith W Caldecott
Journal:  J Biol Chem       Date:  2010-10-28       Impact factor: 5.157

10.  Structure of an aprataxin-DNA complex with insights into AOA1 neurodegenerative disease.

Authors:  Percy Tumbale; C Denise Appel; Rolf Kraehenbuehl; Patrick D Robertson; Jessica S Williams; Joe Krahn; Ivan Ahel; R Scott Williams
Journal:  Nat Struct Mol Biol       Date:  2011-10-09       Impact factor: 15.369

View more
  16 in total

1.  Novel alternative ribonucleotide excision repair pathways in human cells by DDX3X and specialized DNA polymerases.

Authors:  Valentina Riva; Anna Garbelli; Federica Casiraghi; Francesca Arena; Claudia Immacolata Trivisani; Assunta Gagliardi; Luca Bini; Martina Schroeder; Antonio Maffia; Simone Sabbioneda; Giovanni Maga
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

Review 2.  Molecular mechanisms of topoisomerase 2 DNA-protein crosslink resolution.

Authors:  Amanda A Riccio; Matthew J Schellenberg; R Scott Williams
Journal:  Cell Mol Life Sci       Date:  2019-11-15       Impact factor: 9.261

3.  Rotational and translational positions determine the structural and dynamic impact of a single ribonucleotide incorporated in the nucleosome.

Authors:  Iwen Fu; Duncan J Smith; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2018-11-29

Review 4.  Ribonucleotide discrimination by translesion synthesis DNA polymerases.

Authors:  Alexandra Vaisman; Roger Woodgate
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-07-04       Impact factor: 8.250

Review 5.  Close encounters for the first time: Helicase interactions with DNA damage.

Authors:  Irfan Khan; Joshua A Sommers; Robert M Brosh
Journal:  DNA Repair (Amst)       Date:  2015-06-16

6.  Ribodysgenesis: sudden genome instability in the yeast Saccharomyces cerevisiae arising from RNase H2 cleavage at genomic-embedded ribonucleotides.

Authors:  Yang Sui; Anastasiya Epstein; Margaret Dominska; Dao-Qiong Zheng; Thomas D Petes; Hannah L Klein
Journal:  Nucleic Acids Res       Date:  2022-06-24       Impact factor: 19.160

Review 7.  Processing ribonucleotides incorporated during eukaryotic DNA replication.

Authors:  Jessica S Williams; Scott A Lujan; Thomas A Kunkel
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-20       Impact factor: 94.444

8.  Genome-wide mapping of embedded ribonucleotides and other noncanonical nucleotides using emRiboSeq and EndoSeq.

Authors:  James Ding; Martin S Taylor; Andrew P Jackson; Martin A M Reijns
Journal:  Nat Protoc       Date:  2015-08-27       Impact factor: 13.491

9.  Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2.

Authors:  Matthew J Schellenberg; Lalith Perera; Christina N Strom; Crystal A Waters; Brinda Monian; C Denise Appel; Caroline K Vilas; Jason G Williams; Dale A Ramsden; R Scott Williams
Journal:  Nucleic Acids Res       Date:  2016-04-08       Impact factor: 16.971

10.  Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease.

Authors:  Alejandro Álvarez-Quilón; Jessica L Wojtaszek; Marie-Claude Mathieu; Tejas Patel; C Denise Appel; Nicole Hustedt; Silvia Emma Rossi; Bret D Wallace; Dheva Setiaputra; Salomé Adam; Yota Ohashi; Henrique Melo; Tiffany Cho; Christian Gervais; Ivan M Muñoz; Eric Grazzini; Jordan T F Young; John Rouse; Michael Zinda; R Scott Williams; Daniel Durocher
Journal:  Mol Cell       Date:  2020-06-08       Impact factor: 17.970

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.