Literature DB >> 23370394

Elaborate security TRAINing to fight against expression of genomic junk.

Eugene V Koonin1.   

Abstract

A new study shows that the expression of two classes of repetitive elements in the mouse genome is controlled through two complementary mechanisms: DNA methylation and p53-mediated transcription suppression.¹ When both lines of defense fail, expression of the repeats yields large quantities of double-stranded RNA, triggering interferon response that leads to caspase-dependent cell death. These notable findings highlight two fundamental trends: tight coupling of defense and cell death mechanisms that appears to be universal in cellular life and the exploitation of the expression of "junk" DNA as a signal triggering "altruistic" cell suicide.

Entities:  

Keywords:  DNA methylation; SINE repeats; interferon response; p53; transposable elements

Mesh:

Substances:

Year:  2013        PMID: 23370394      PMCID: PMC3594256          DOI: 10.4161/cc.23717

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  23 in total

Review 1.  Transposable elements and their identification.

Authors:  Wojciech Makałowski; Amit Pande; Valer Gotea; Izabela Makałowska
Journal:  Methods Mol Biol       Date:  2012

Review 2.  Genomic DNA methylation: the mark and its mediators.

Authors:  Robert J Klose; Adrian P Bird
Journal:  Trends Biochem Sci       Date:  2006-01-05       Impact factor: 13.807

Review 3.  Interferon signalling network in innate defence.

Authors:  Akinori Takaoka; Hideyuki Yanai
Journal:  Cell Microbiol       Date:  2006-06       Impact factor: 3.715

Review 4.  Which transposable elements are active in the human genome?

Authors:  Ryan E Mills; E Andrew Bennett; Rebecca C Iskow; Scott E Devine
Journal:  Trends Genet       Date:  2007-02-27       Impact factor: 11.639

5.  The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties.

Authors:  Patrick Forterre; David Prangishvili
Journal:  Ann N Y Acad Sci       Date:  2009-10       Impact factor: 5.691

Review 6.  Uniting germline and stem cells: the function of Piwi proteins and the piRNA pathway in diverse organisms.

Authors:  Celina Juliano; Jianquan Wang; Haifan Lin
Journal:  Annu Rev Genet       Date:  2011-09-19       Impact factor: 16.830

Review 7.  The central role of RNA in human development and cognition.

Authors:  John S Mattick
Journal:  FEBS Lett       Date:  2011-05-06       Impact factor: 4.124

Review 8.  The many faces of RNAi.

Authors:  René F Ketting
Journal:  Dev Cell       Date:  2011-02-15       Impact factor: 12.270

Review 9.  Origins and evolution of eukaryotic RNA interference.

Authors:  Svetlana A Shabalina; Eugene V Koonin
Journal:  Trends Ecol Evol       Date:  2008-08-18       Impact factor: 17.712

10.  C. elegans piRNAs mediate the genome-wide surveillance of germline transcripts.

Authors:  Heng-Chi Lee; Weifeng Gu; Masaki Shirayama; Elaine Youngman; Darryl Conte; Craig C Mello
Journal:  Cell       Date:  2012-06-25       Impact factor: 41.582

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  1 in total

1.  p53 binding to human genome: crowd control navigation in chromatin context.

Authors:  Krassimira Botcheva
Journal:  Front Genet       Date:  2014-12-22       Impact factor: 4.599

  1 in total

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