Literature DB >> 22407715

Transposable elements and their identification.

Wojciech Makałowski1, Amit Pande, Valer Gotea, Izabela Makałowska.   

Abstract

Most genomes are populated by thousands of sequences that originated from mobile elements. On the one hand, these sequences present a real challenge in the process of genome analysis and annotation. On the other hand, there are very interesting biological subjects involved in many cellular processes. Here, we present an overview of transposable elements (TEs) biodiversity and their impact on genomic evolution. Finally, we discuss different approaches to the TEs detection and analyses.

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Year:  2012        PMID: 22407715     DOI: 10.1007/978-1-61779-582-4_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

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Authors:  Christian Lavialle; Guillaume Cornelis; Anne Dupressoir; Cécile Esnault; Odile Heidmann; Cécile Vernochet; Thierry Heidmann
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-08-12       Impact factor: 6.237

Review 2.  Exogenous enzymes upgrade transgenesis and genetic engineering of farm animals.

Authors:  Pablo Bosch; Diego O Forcato; Fabrisio E Alustiza; Ana P Alessio; Alejandro E Fili; María F Olmos Nicotra; Ana C Liaudat; Nancy Rodríguez; Thirumala R Talluri; Wilfried A Kues
Journal:  Cell Mol Life Sci       Date:  2015-02-01       Impact factor: 9.261

3.  Elaborate security TRAINing to fight against expression of genomic junk.

Authors:  Eugene V Koonin
Journal:  Cell Cycle       Date:  2013-01-31       Impact factor: 4.534

4.  Coevolution mechanisms that adapt viruses to genetic code variations implemented in their hosts.

Authors:  Sushil Kumar; Renu Kumari; Vishakha Sharma
Journal:  J Genet       Date:  2016-03       Impact factor: 1.166

Review 5.  How retrotransposons shape genome regulation.

Authors:  Paolo Mita; Jef D Boeke
Journal:  Curr Opin Genet Dev       Date:  2016-02-06       Impact factor: 5.578

6.  The genome sequence of a widespread apex predator, the golden eagle (Aquila chrysaetos).

Authors:  Jacqueline M Doyle; Todd E Katzner; Peter H Bloom; Yanzhu Ji; Bhagya K Wijayawardena; J Andrew DeWoody
Journal:  PLoS One       Date:  2014-04-23       Impact factor: 3.240

7.  T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.

Authors:  Anna-Sophie Fiston-Lavier; Maite G Barrón; Dmitri A Petrov; Josefa González
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

8.  Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales.

Authors:  Josefa González; Jose Martínez; Wojciech Makalowski
Journal:  Biol Direct       Date:  2015-10-14       Impact factor: 4.540

9.  Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology.

Authors:  Emilie Debladis; Christel Llauro; Marie-Christine Carpentier; Marie Mirouze; Olivier Panaud
Journal:  BMC Genomics       Date:  2017-07-17       Impact factor: 3.969

10.  A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster.

Authors:  Miriam Merenciano; Camillo Iacometti; Josefa González
Journal:  Mob DNA       Date:  2019-03-13
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