Literature DB >> 17331616

Which transposable elements are active in the human genome?

Ryan E Mills1, E Andrew Bennett, Rebecca C Iskow, Scott E Devine.   

Abstract

Although a large proportion (44%) of the human genome is occupied by transposons and transposon-like repetitive elements, only a small proportion (<0.05%) of these elements remain active today. Recent evidence indicates that approximately 35-40 subfamilies of Alu, L1 and SVA elements (and possibly HERV-K elements) remain actively mobile in the human genome. These active transposons are of great interest because they continue to produce genetic diversity in human populations and also cause human diseases by integrating into genes. In this review, we examine these active human transposons and explore mechanistic factors that influence their mobilization.

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Year:  2007        PMID: 17331616     DOI: 10.1016/j.tig.2007.02.006

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  201 in total

Review 1.  Active human retrotransposons: variation and disease.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Curr Opin Genet Dev       Date:  2012-03-08       Impact factor: 5.578

Review 2.  Male germline control of transposable elements.

Authors:  Jianqiang Bao; Wei Yan
Journal:  Biol Reprod       Date:  2012-05-31       Impact factor: 4.285

Review 3.  Small insertions and deletions (INDELs) in human genomes.

Authors:  Julienne M Mullaney; Ryan E Mills; W Stephen Pittard; Scott E Devine
Journal:  Hum Mol Genet       Date:  2010-09-21       Impact factor: 6.150

4.  Epigenetic control of retrotransposon expression in human embryonic stem cells.

Authors:  Angela Macia; Martin Muñoz-Lopez; Jose Luis Cortes; Robert K Hastings; Santiago Morell; Gema Lucena-Aguilar; Juan Antonio Marchal; Richard M Badge; Jose Luis Garcia-Perez
Journal:  Mol Cell Biol       Date:  2010-11-01       Impact factor: 4.272

Review 5.  Annotating non-coding regions of the genome.

Authors:  Roger P Alexander; Gang Fang; Joel Rozowsky; Michael Snyder; Mark B Gerstein
Journal:  Nat Rev Genet       Date:  2010-07-13       Impact factor: 53.242

6.  Assembly and characterization of novel Alu inserts detected from next-generation sequencing data.

Authors:  Harun Mustafa; Matei David; Michael Brudno
Journal:  Mob Genet Elements       Date:  2014-12-12

7.  Characterization of irritans mariner-like elements in the olive fruit fly Bactrocera oleae (Diptera: Tephritidae): evolutionary implications.

Authors:  Wafa Ben Lazhar-Ajroud; Aurore Caruso; Maha Mezghani; Maryem Bouallegue; Emmanuelle Tastard; Françoise Denis; Jacques-Deric Rouault; Hanem Makni; Pierre Capy; Benoît Chénais; Mohamed Makni; Nathalie Casse
Journal:  Naturwissenschaften       Date:  2016-07-08

8.  An AAA+ ATPase Clamshell Targets Transposition.

Authors:  Chi-Lin Tsai; Gareth J Williams; J Jefferson P Perry; John A Tainer
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

9.  TypeTE: a tool to genotype mobile element insertions from whole genome resequencing data.

Authors:  Clément Goubert; Jainy Thomas; Lindsay M Payer; Jeffrey M Kidd; Julie Feusier; W Scott Watkins; Kathleen H Burns; Lynn B Jorde; Cédric Feschotte
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 10.  Unveiling Human Non-Random Genome Editing Mechanisms Activated in Response to Chronic Environmental Changes: I. Where Might These Mechanisms Come from and What Might They Have Led To?

Authors:  Loris Zamai
Journal:  Cells       Date:  2020-10-27       Impact factor: 6.600

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