Literature DB >> 23368387

Using temporal correlations and full distributions to separate intrinsic and extrinsic fluctuations in biological systems.

Andreas Hilfinger1, Mark Chen, Johan Paulsson.   

Abstract

Studies of stochastic biological dynamics typically compare observed fluctuations to theoretically predicted variances, sometimes after separating the intrinsic randomness of the system from the enslaving influence of changing environments. But variances have been shown to discriminate surprisingly poorly between alternative mechanisms, while for other system properties no approaches exist that rigorously disentangle environmental influences from intrinsic effects. Here, we apply the theory of generalized random walks in random environments to derive exact rules for decomposing time series and higher statistics, rather than just variances. We show for which properties and for which classes of systems intrinsic fluctuations can be analyzed without accounting for extrinsic stochasticity and vice versa. We derive two independent experimental methods to measure the separate noise contributions and show how to use the additional information in temporal correlations to detect multiplicative effects in dynamical systems.

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Mesh:

Year:  2012        PMID: 23368387      PMCID: PMC3697929          DOI: 10.1103/PhysRevLett.109.248104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  23 in total

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2.  Noise in eukaryotic gene expression.

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3.  Stochastic gene expression in a single cell.

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4.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

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5.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
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6.  Unequal twins: probability distributions do not determine everything.

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Journal:  Phys Rev Lett       Date:  2011-12-19       Impact factor: 9.161

7.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

8.  Separating intrinsic from extrinsic fluctuations in dynamic biological systems.

Authors:  Andreas Hilfinger; Johan Paulsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

9.  Sources of human psychological differences: the Minnesota Study of Twins Reared Apart.

Authors:  T J Bouchard; D T Lykken; M McGue; N L Segal; A Tellegen
Journal:  Science       Date:  1990-10-12       Impact factor: 47.728

10.  Quantitative analysis of the transcription control mechanism.

Authors:  Changhui Mao; Christopher R Brown; Elena Falkovskaia; Shawfeng Dong; Eva Hrabeta-Robinson; Lauren Wenger; Hinrich Boeger
Journal:  Mol Syst Biol       Date:  2010-11-19       Impact factor: 11.429

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  5 in total

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2.  Contributions of cell growth and biochemical reactions to nongenetic variability of cells.

Authors:  Anne Schwabe; Frank J Bruggeman
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

3.  Pathway dynamics can delineate the sources of transcriptional noise in gene expression.

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Review 4.  Addressing biological uncertainties in engineering gene circuits.

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Journal:  Integr Biol (Camb)       Date:  2015-12-17       Impact factor: 2.192

5.  Quantifying intrinsic and extrinsic variability in stochastic gene expression models.

Authors:  Abhyudai Singh; Mohammad Soltani
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

  5 in total

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