Literature DB >> 23349292

Tunable signal processing through modular control of transcription factor translocation.

Nan Hao1, Bogdan A Budnik, Jeremy Gunawardena, Erin K O'Shea.   

Abstract

Signaling pathways can induce different dynamics of transcription factor (TF) activation. We explored how TFs process signaling inputs to generate diverse dynamic responses. The budding yeast general stress-responsive TF Msn2 acted as a tunable signal processor that could track, filter, or integrate signals in an input-dependent manner. This tunable signal processing appears to originate from dual regulation of both nuclear import and export by phosphorylation, as mutants with one form of regulation sustained only one signal-processing function. Versatile signal processing by Msn2 is crucial for generating distinct dynamic responses to different natural stresses. Our findings reveal how complex signal-processing functions are integrated into a single molecule and provide a guide for the design of TFs with "programmable" signal-processing functions.

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Year:  2013        PMID: 23349292      PMCID: PMC3746486          DOI: 10.1126/science.1227299

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  33 in total

1.  Acute glucose starvation activates the nuclear localization signal of a stress-specific yeast transcription factor.

Authors:  Wolfram Görner; Erich Durchschlag; Julia Wolf; Elizabeth L Brown; Gustav Ammerer; Helmut Ruis; Christoph Schüller
Journal:  EMBO J       Date:  2002-01-15       Impact factor: 11.598

2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

3.  Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation.

Authors:  Cecilia Garmendia-Torres; Albert Goldbeter; Michel Jacquet
Journal:  Curr Biol       Date:  2007-06-19       Impact factor: 10.834

4.  Signal processing by the HOG MAP kinase pathway.

Authors:  Pascal Hersen; Megan N McClean; L Mahadevan; Sharad Ramanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-14       Impact factor: 11.205

5.  Stimulus specificity of gene expression programs determined by temporal control of IKK activity.

Authors:  Shannon L Werner; Derren Barken; Alexander Hoffmann
Journal:  Science       Date:  2005-09-16       Impact factor: 47.728

6.  Tunable signal processing in synthetic MAP kinase cascades.

Authors:  Ellen C O'Shaughnessy; Santhosh Palani; James J Collins; Casim A Sarkar
Journal:  Cell       Date:  2011-01-07       Impact factor: 41.582

7.  Concerted dephosphorylation of the transcription factor NFAT1 induces a conformational switch that regulates transcriptional activity.

Authors:  H Okamura; J Aramburu; C García-Rodríguez; J P Viola; A Raghavan; M Tahiliani; X Zhang; J Qin; P G Hogan; A Rao
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

8.  Differential localization to cytoplasm, nucleus or P-bodies of yeast PKA subunits under different growth conditions.

Authors:  V Tudisca; V Recouvreux; S Moreno; E Boy-Marcotte; M Jacquet; P Portela
Journal:  Eur J Cell Biol       Date:  2009-10-04       Impact factor: 4.492

9.  Mechanism and regulation of nucleocytoplasmic trafficking of smad.

Authors:  Xiaochu Chen; Lan Xu
Journal:  Cell Biosci       Date:  2011-12-28       Impact factor: 7.133

10.  Frequency-modulated nuclear localization bursts coordinate gene regulation.

Authors:  Long Cai; Chiraj K Dalal; Michael B Elowitz
Journal:  Nature       Date:  2008-09-25       Impact factor: 49.962

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  68 in total

Review 1.  Regulation of Posttranslational Modifications of HMGB1 During Immune Responses.

Authors:  Yiting Tang; Xin Zhao; Daniel Antoine; Xianzhong Xiao; Haichao Wang; Ulf Andersson; Timothy R Billiar; Kevin J Tracey; Ben Lu
Journal:  Antioxid Redox Signal       Date:  2016-02-05       Impact factor: 8.401

2.  Coupled feedback loops control the stimulus-dependent dynamics of the yeast transcription factor Msn2.

Authors:  Yanfei Jiang; Zohreh AkhavanAghdam; Lev S Tsimring; Nan Hao
Journal:  J Biol Chem       Date:  2017-06-21       Impact factor: 5.157

Review 3.  Regulation of transcription factor activity by interconnected post-translational modifications.

Authors:  Theresa M Filtz; Walter K Vogel; Mark Leid
Journal:  Trends Pharmacol Sci       Date:  2013-12-30       Impact factor: 14.819

4.  Structural biology: Signalling from disordered proteins.

Authors:  Vincent J Hilser
Journal:  Nature       Date:  2013-06-20       Impact factor: 49.962

5.  Nucleocytoplasmic shuttling of a GATA transcription factor functions as a development timer.

Authors:  Huaqing Cai; Mariko Katoh-Kurasawa; Tetsuya Muramoto; Balaji Santhanam; Yu Long; Lei Li; Masahiro Ueda; Pablo A Iglesias; Gad Shaulsky; Peter N Devreotes
Journal:  Science       Date:  2014-03-21       Impact factor: 47.728

6.  High-throughput microfluidics to control and measure signaling dynamics in single yeast cells.

Authors:  Anders S Hansen; Nan Hao; Erin K O'Shea
Journal:  Nat Protoc       Date:  2015-07-09       Impact factor: 13.491

7.  Akt signaling dynamics in individual cells.

Authors:  Sean M Gross; Peter Rotwein
Journal:  J Cell Sci       Date:  2015-06-03       Impact factor: 5.285

Review 8.  Advances in fluorescence labeling strategies for dynamic cellular imaging.

Authors:  Kevin M Dean; Amy E Palmer
Journal:  Nat Chem Biol       Date:  2014-07       Impact factor: 15.040

9.  JAK/STAT1 signaling promotes HMGB1 hyperacetylation and nuclear translocation.

Authors:  Ben Lu; Daniel J Antoine; Kevin Kwan; Peter Lundbäck; Heidi Wähämaa; Hanna Schierbeck; Melissa Robinson; Marieke A D Van Zoelen; Huan Yang; Jianhua Li; Helena Erlandsson-Harris; Sangeeta S Chavan; Haichao Wang; Ulf Andersson; Kevin J Tracey
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

10.  Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast.

Authors:  Alessandro Rienzo; Daniel Poveda-Huertes; Selcan Aydin; Nicolas E Buchler; Amparo Pascual-Ahuir; Markus Proft
Journal:  Mol Cell Biol       Date:  2015-08-17       Impact factor: 4.272

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