Literature DB >> 24937069

Advances in fluorescence labeling strategies for dynamic cellular imaging.

Kevin M Dean1, Amy E Palmer1.   

Abstract

Synergistic advances in optical physics, probe design, molecular biology, labeling techniques and computational analysis have propelled fluorescence imaging into new realms of spatiotemporal resolution and sensitivity. This review aims to discuss advances in fluorescent probes and live-cell labeling strategies, two areas that remain pivotal for future advances in imaging technology. Fluorescent protein- and bio-orthogonal-based methods for protein and RNA imaging are discussed as well as emerging bioengineering techniques that enable their expression at specific genomic loci (for example, CRISPR and TALENs). Important attributes that contribute to the success of each technique are emphasized, providing a guideline for future advances in dynamic live-cell imaging.

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Year:  2014        PMID: 24937069      PMCID: PMC4248787          DOI: 10.1038/nchembio.1556

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  96 in total

1.  Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer.

Authors:  Murat Sunbul; Andres Jäschke
Journal:  Angew Chem Int Ed Engl       Date:  2013-10-16       Impact factor: 15.336

Review 2.  Microenvironmental regulation of tumor progression and metastasis.

Authors:  Daniela F Quail; Johanna A Joyce
Journal:  Nat Med       Date:  2013-11       Impact factor: 53.440

3.  High resolution detection of DNA-RNA hybrids in situ by indirect immunofluorescence.

Authors:  G T Rudkin; B D Stollar
Journal:  Nature       Date:  1977-02-03       Impact factor: 49.962

4.  Multiplexed ion beam imaging of human breast tumors.

Authors:  Michael Angelo; Sean C Bendall; Rachel Finck; Matthew B Hale; Chuck Hitzman; Alexander D Borowsky; Richard M Levenson; John B Lowe; Scot D Liu; Shuchun Zhao; Yasodha Natkunam; Garry P Nolan
Journal:  Nat Med       Date:  2014-03-02       Impact factor: 53.440

5.  Fluorophore labeling of native FKBP12 by ligand-directed tosyl chemistry allows detection of its molecular interactions in vitro and in living cells.

Authors:  Tomonori Tamura; Yoshiyuki Kioi; Takayuki Miki; Shinya Tsukiji; Itaru Hamachi
Journal:  J Am Chem Soc       Date:  2013-04-26       Impact factor: 15.419

6.  Tunable signal processing through modular control of transcription factor translocation.

Authors:  Nan Hao; Bogdan A Budnik; Jeremy Gunawardena; Erin K O'Shea
Journal:  Science       Date:  2013-01-25       Impact factor: 47.728

7.  Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Authors:  Hui-wang Ai; Nathan C Shaner; Zihao Cheng; Roger Y Tsien; Robert E Campbell
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

8.  Counting molecules in single organelles with superresolution microscopy allows tracking of the endosome maturation trajectory.

Authors:  Elias M Puchner; Jessica M Walter; Robert Kasper; Bo Huang; Wendell A Lim
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

9.  An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore.

Authors:  Oksana M Subach; Paula J Cranfill; Michael W Davidson; Vladislav V Verkhusha
Journal:  PLoS One       Date:  2011-12-08       Impact factor: 3.240

10.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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  106 in total

1.  Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo.

Authors:  Marie-Aude Plamont; Emmanuelle Billon-Denis; Sylvie Maurin; Carole Gauron; Frederico M Pimenta; Christian G Specht; Jian Shi; Jérôme Quérard; Buyan Pan; Julien Rossignol; Karine Moncoq; Nelly Morellet; Michel Volovitch; Ewen Lescop; Yong Chen; Antoine Triller; Sophie Vriz; Thomas Le Saux; Ludovic Jullien; Arnaud Gautier
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

Review 2.  Signal Transduction at the Single-Cell Level: Approaches to Study the Dynamic Nature of Signaling Networks.

Authors:  L Naomi Handly; Jason Yao; Roy Wollman
Journal:  J Mol Biol       Date:  2016-07-16       Impact factor: 5.469

3.  High-throughput microfluidics to control and measure signaling dynamics in single yeast cells.

Authors:  Anders S Hansen; Nan Hao; Erin K O'Shea
Journal:  Nat Protoc       Date:  2015-07-09       Impact factor: 13.491

Review 4.  Development of an effective protein-labeling system based on smart fluorogenic probes.

Authors:  Shahi Imam Reja; Masafumi Minoshima; Yuichiro Hori; Kazuya Kikuchi
Journal:  J Biol Inorg Chem       Date:  2019-05-31       Impact factor: 3.358

5.  A Ratiometric and near-Infrared Fluorescent Probe for Imaging Cu2+ in Living Cells and Animals.

Authors:  Rui Guo; Qiuan Wang; Weiying Lin
Journal:  J Fluoresc       Date:  2017-04-19       Impact factor: 2.217

Review 6.  What Combined Measurements From Structures and Imaging Tell Us About DNA Damage Responses.

Authors:  Chris A Brosey; Zamal Ahmed; Susan P Lees-Miller; John A Tainer
Journal:  Methods Enzymol       Date:  2017-05-29       Impact factor: 1.600

7.  Effects of laser polarization on responses of the fluorescent Ca2+ indicator X-Rhod-1 in neurons and myelin.

Authors:  Ileana Micu; Craig Brideau; Li Lu; Peter K Stys
Journal:  Neurophotonics       Date:  2017-06-05       Impact factor: 3.593

8.  Super-resolution microscopy with DNA-PAINT.

Authors:  Joerg Schnitzbauer; Maximilian T Strauss; Thomas Schlichthaerle; Florian Schueder; Ralf Jungmann
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

9.  Real-Time Visualization and Quantification of Contractile Ring Proteins in Single Living Cells.

Authors:  Reshma Davidson; Yajun Liu; Kenneth S Gerien; Jian-Qiu Wu
Journal:  Methods Mol Biol       Date:  2016

10.  Characterization of flavin binding in oxygen-independent fluorescent reporters.

Authors:  Nolan T Anderson; Kevin B Weyant; Arnab Mukherjee
Journal:  AIChE J       Date:  2020-10-02       Impact factor: 3.993

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