Literature DB >> 2334714

NMR determination of the orientation of the magnetic susceptibility tensor in cyanometmyoglobin: a new probe of steric tilt of bound ligand.

S D Emerson1, G N La Mar.   

Abstract

The experimentally determined paramagnetic dipolar shifts for noncoordinated amino acid side-chain protons in the heme pocket of sperm whale cyanometmyoglobin [Emerson, S. d., & La Mar, G. N. (1990) Biochemistry (preceding paper in this issue]) were used to determine in solution the orientation of the principal axes for the paramagnetic susceptibility tensor relative to the heme iron molecular coordinates. The determination was made by a least-squares search for the unique Euler rotation angles which convert the geometric factors in the molecular (crystal) coordinates to ones that correctly predict each of 41 known dipolar shifts by using the magnetic anisotropies computed previously [Horrocks, W. D., Jr., & Greenberg, E. S. (973) Biochim. Biophys. Acta 322, 38-44]. An excellent fit to experimental shifts was obtained, which also provided predictions that allowed subsequent new assignments to be made. The magnetic axes are oriented so that the z axis is tipped approximately 15 degrees from the heme normal toward the hem delta-meso-H and coincides approximately with the characterized FeCO tilt axis in the isostructural MbCO complex [Kuriyan, J., Wilz, S., Karplus, M., & Petsko, G. A. (1986) J. Mol. Biol. 192, 133-154]. Since the FeCO and FeCN units are isostructural, we propose that the dominant protein constraints that tips the magnetic z axis from the heme normal is the tilt of the FeCN by steric interactions with the distal residues. The rhombic magnetic axes were found to align closely with the projection of the proximal His imidazole plane on the heme, confirming that the His-Fe bonding provides the protein constraints that orients the in-plane anisotrophy. The tipped magnetic z axis is shown to account quantitatively for the previously noted major discrepancy between the hyperfine shift patterns for the bound imidazole side chain in models and protein. Moreover, it is shown that the proximal His ring nolabile proton hyperfine shifts provide direct and exquisitely sensitive indicators of the degree of the z axis tilt that may serve as a valuable probe for characterizing variable steric interactions in the distal pocket of both point mutants and natural genetic variants of myoglobin.

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Year:  1990        PMID: 2334714     DOI: 10.1021/bi00458a029

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Cloning, expression, purification, and preliminary characterization of a putative hemoglobin from the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  N L Scott; J T Lecomte
Journal:  Protein Sci       Date:  2000-03       Impact factor: 6.725

2.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

3.  Engineering peroxidase activity in myoglobin: the haem cavity structure and peroxide activation in the T67R/S92D mutant and its derivative reconstituted with protohaemin-l-histidine.

Authors:  Raffaella Roncone; Enrico Monzani; Monica Murtas; Giuseppe Battaini; Andrea Pennati; Anna Maria Sanangelantoni; Simone Zuccotti; Martino Bolognesi; Luigi Casella
Journal:  Biochem J       Date:  2004-02-01       Impact factor: 3.857

4.  High-pressure 1H NMR study of pressure-induced structural changes in the heme environments of metcyanomyoglobins.

Authors:  Ryo Kitahara; Minoru Kato; Yoshihiro Taniguchi
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

5.  Angular dependence of dipole-dipole-Curie-spin cross-correlation effects in high-spin and low-spin paramagnetic myoglobin.

Authors:  Guido Pintacuda; Karin Hohenthanner; Gottfried Otting; Norbert Müller
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

6.  Effects of axial methionine coordination on the in-plane asymmetry of the heme electronic structure of cytochrome c.

Authors:  Naoki Tachiiri; Hikaru Hemmi; Shin-Ichi Joseph Takayama; Hajime Mita; Jun Hasegawa; Yoshihiro Sambongi; Yasuhiko Yamamoto
Journal:  J Biol Inorg Chem       Date:  2004-07-03       Impact factor: 3.358

7.  Long-range interaction networks in the function and fidelity of poliovirus RNA-dependent RNA polymerase studied by nuclear magnetic resonance.

Authors:  Xiaorong Yang; Jesse L Welch; Jamie J Arnold; David D Boehr
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

8.  Zinc-substituted Desulfovibrio gigas desulforedoxins: resolving subunit degeneracy with nonsymmetric pseudocontact shifts.

Authors:  Brian J Goodfellow; Sofia G Nunes; Frank Rusnak; Isabel Moura; Carla Ascenso; José J G Moura; Brian F Volkman; John L Markley
Journal:  Protein Sci       Date:  2002-10       Impact factor: 6.725

9.  Solution 1H nuclear magnetic resonance determination of the distal pocket structure of cyanomet complexes of genetically engineered sperm whale myoglobin His64 (E7)-->Val, Thr67 (E10)-->Arg. The role of distal hydrogen bonding by Arg67 (E10) in modulating ligand tilt.

Authors:  J Qin; G N La Mar; F Cutruzzolá; C T Allocatelli; A Brancaccio; M Brunori
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

10.  Electron spin density on the axial His ligand of high-spin and low-spin nitrophorin 2 probed by heteronuclear NMR spectroscopy.

Authors:  Luciano A Abriata; María-Eugenia Zaballa; Robert E Berry; Fei Yang; Hongjun Zhang; F Ann Walker; Alejandro J Vila
Journal:  Inorg Chem       Date:  2013-01-17       Impact factor: 5.165

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