Literature DB >> 8298042

Solution 1H nuclear magnetic resonance determination of the distal pocket structure of cyanomet complexes of genetically engineered sperm whale myoglobin His64 (E7)-->Val, Thr67 (E10)-->Arg. The role of distal hydrogen bonding by Arg67 (E10) in modulating ligand tilt.

J Qin1, G N La Mar, F Cutruzzolá, C T Allocatelli, A Brancaccio, M Brunori.   

Abstract

Sequence-specific 2D methodology has been used to assign the 1H NMR signals for all active site residues in the paramagnetic cyano-met complexes of sperm whale synthetic double mutant His64[E7]-->Val/Thr67[E10]-->Arg (VR-met-MbCN) and triple mutant His64[E7]-->Val/Thr67[E10]-->Arg/Arg45[CD3]-->Asn (VRN-metMbCN). The resulting dipolar shifts for noncoordinated proximal side residues were used to quantitatively determine the orientation of the paramagnetic susceptibility tensor in the molecular framework for the two mutants, which were found indistinguishable but distinct from those of both wild-type and the His64[E7]-->Val single point mutant (V-metMbCN). The observed dipolar shifts for the E helix backbone protons and Phe43[CD1], together with steady-state nuclear Overhauser effect between the E helix and the heme, were analyzed to show that both the E helix and Phe43[CD1] move slightly closer to the iron to minimize the vacancy resulting from the His64[E7]-->Val substitution, as found in V-metMbCN (Rajarathnam, K., J. Qin, G.N. LaMar, M. L. Chiu, and S. G. Sligar. 1993. Biochemistry. 32:5670-5680). The dipolar shifts of the mutated Val64[E7] and Arg67[E10] allow the determination of their orientations relative to the heme, and the latter residue is shown to insert into the pocket and provide a hydrogen bond to the coordinated ligand, as found in the naturally occurring ValE7/ArgE10 genetic variant, Aplysia limacina Mb. The oxy-complex of both A. limacina Mb and VR-Mb, VRN-Mb have been proposed to be stabilized by this hydrogen bonding interaction (Travaglini Allocatelli, C. et al. 1993. Biochemistry. 32:6041-6049). The magnitude of the tilt of the major magnetic axes from the heme normal in VR-metMbCN and VRN-metMbCN, which is related to the tilt of the ligand, is the same as in wild-type or V-metMbCN, but the direction of tilt is altered from that in V-metMbCN. It is concluded that the change in the direction of the ligand tilt in both the double and triple mutants, as compared to WT metMbCN and V-metMbCN single mutant, is due to the attractive hydrogen-bonding between ArgE10 and the bound cyanide.

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Year:  1993        PMID: 8298042      PMCID: PMC1225950          DOI: 10.1016/S0006-3495(93)81270-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

1.  Solution 1H nuclear magnetic resonance determination of hydrogen bonding of the E10 (66) Arg side-chain to the bound ligand in Aplysia cyano-met myoglobin.

Authors:  J Qin; G N La Mar; F Ascoli; M Bolognesi; M Brunori
Journal:  J Mol Biol       Date:  1992-04-20       Impact factor: 5.469

2.  Binding mode of azide to ferric Aplysia limacina myoglobin. Crystallographic analysis at 1.9 A resolution.

Authors:  A Mattevi; G Gatti; A Coda; M Rizzi; P Ascenzi; M Brunori; M Bolognesi
Journal:  J Mol Recognit       Date:  1991-02       Impact factor: 2.137

3.  Crystal structure of a distal site double mutant of sperm whale myoglobin at 1.6 A resolution.

Authors:  M Rizzi; M Bolognesi; A Coda; F Cutruzzolà; C T Allocatelli; A Brancaccio; M Brunori
Journal:  FEBS Lett       Date:  1993-03-29       Impact factor: 4.124

4.  Proton nuclear magnetic resonance study of the solution distal histidine orientation in monomeric Chironomus thummi thummi cyanomet hemoglobins. Dynamic stability of the heme pocket as monitored by labile proton exchange.

Authors:  D H Peyton; G N La Mar; S Ramaprasad; S W Unger; S Sankar; K Gersonde
Journal:  J Mol Biol       Date:  1991-10-05       Impact factor: 5.469

5.  High-resolution X-ray structures of pig metmyoglobin and two CD3 mutants: Mb(Lys45----Arg) and Mb(Lys45----Ser).

Authors:  T J Oldfield; S J Smerdon; Z Dauter; K Petratos; K S Wilson; A J Wilkinson
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

6.  Complete sequence-specific 1H NMR resonance assignment of hyperfine-shifted residues in the active site of a paramagnetic protein: application to Aplysia cyano-metmyoglobin.

Authors:  J Qin; G N La Mar
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

7.  Structural and functional characterization of sperm whale myoglobin mutants: role of arginine (E10) in ligand stabilization.

Authors:  C T Allocatelli; F Cutruzzolà; A Brancaccio; M Brunori; J Qin; G N La Mar
Journal:  Biochemistry       Date:  1993-06-15       Impact factor: 3.162

8.  Solution structure determination of the heme cavity in the E7 His-->Val cyano-met myoglobin point mutant based on the 1H NMR detected dipolar field of the iron: evidence for contraction of the heme pocket.

Authors:  K Rajarathnam; J Qin; G N La Mar; M L Chiu; S G Sligar
Journal:  Biochemistry       Date:  1993-06-01       Impact factor: 3.162

9.  Relationship between nuclear magnetic resonance chemical shift and protein secondary structure.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  J Mol Biol       Date:  1991-11-20       Impact factor: 5.469

10.  A novel site-directed mutant of myoglobin with an unusually high O2 affinity and low autooxidation rate.

Authors:  T E Carver; R E Brantley; E W Singleton; R M Arduini; M L Quillin; G N Phillips; J S Olson
Journal:  J Biol Chem       Date:  1992-07-15       Impact factor: 5.486

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  3 in total

1.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

2.  A myoglobin mutant designed to mimic the oxygen-avid Ascaris suum hemoglobin: elucidation of the distal hydrogen bonding network by solution NMR.

Authors:  W Zhang; F Cutruzzolá; C T Allocatelli; M Brunori; G N La Mar
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

3.  Aplysia limacina myoglobin cDNA cloning: an alternative mechanism of oxygen stabilization as studied by active-site mutagenesis.

Authors:  F Cutruzzolà; C Travaglini Allocatelli; A Brancaccio; M Brunori
Journal:  Biochem J       Date:  1996-02-15       Impact factor: 3.857

  3 in total

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