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Literature DB >> 23335732

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bastiaan O R Bargmann, Amy Marshall-Colon, Idan Efroni, Sandrine Ruffel, Kenneth D Birnbaum, Gloria M Coruzzi, Gabriel Krouk.

Abstract

Mesh：

Substances：
Transcription Factors

Year: 2013 PMID： 23335732 PMCID： PMC3660954 DOI： 10.1093/mp/sst010

Source DB: PubMed Journal: Mol Plant ISSN： 1674-2052 Impact factor: 13.164

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10 in total

Review 1. Signal transduction in maize and Arabidopsis mesophyll protoplasts.

Authors: J Sheen
Journal: Plant Physiol Date: 2001-12 Impact factor: 8.340

2. A predictive model for transcriptional control of physiology in a free living cell.

Authors: Richard Bonneau; Marc T Facciotti; David J Reiss; Amy K Schmid; Min Pan; Amardeep Kaur; Vesteinn Thorsson; Paul Shannon; Michael H Johnson; J Christopher Bare; William Longabaugh; Madhavi Vuthoori; Kenia Whitehead; Aviv Madar; Lena Suzuki; Tetsuya Mori; Dong-Eun Chang; Jocelyne Diruggiero; Carl H Johnson; Leroy Hood; Nitin S Baliga
Journal: Cell Date: 2007-12-28 Impact factor: 41.582

3. Positive fluorescent selection permits precise, rapid, and in-depth overexpression analysis in plant protoplasts.

Authors: Bastiaan O R Bargmann; Kenneth D Birnbaum
Journal: Plant Physiol Date: 2009-01-23 Impact factor: 8.340

4. A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Authors: Sandrine Ruffel; Gabriel Krouk; Gloria M Coruzzi
Journal: Plant Physiol Date: 2009-11-25 Impact factor: 8.340

5. Mammalian glucocorticoid receptor derivatives enhance transcription in yeast.

Authors: M Schena; K R Yamamoto
Journal: Science Date: 1988-08-19 Impact factor: 47.728

6. The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis.

Authors: Siobhan Mary Brady; Sara F Sarkar; Dario Bonetta; Peter McCourt
Journal: Plant J Date: 2003-04 Impact factor: 6.417

7. In Vivo Inhibition of Seed Development and Reserve Protein Accumulation in Recombinants of Abscisic Acid Biosynthesis and Responsiveness Mutants in Arabidopsis thaliana.

Authors: M Koornneef; C J Hanhart; H W Hilhorst; C M Karssen
Journal: Plant Physiol Date: 1989-06 Impact factor: 8.340

8. Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling.

Authors: Masaharu Suzuki; Matthew G Ketterling; Qin-Bao Li; Donald R McCarty
Journal: Plant Physiol Date: 2003-07 Impact factor: 8.340

9. Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon.

Authors: Gudrun Mönke; Michael Seifert; Jens Keilwagen; Michaela Mohr; Ivo Grosse; Urs Hähnel; Astrid Junker; Bernd Weisshaar; Udo Conrad; Helmut Bäumlein; Lothar Altschmied
Journal: Nucleic Acids Res Date: 2012-06-22 Impact factor: 16.971

10. Direct targets of the transcription factors ABA-Insensitive(ABI)4 and ABI5 reveal synergistic action by ABI4 and several bZIP ABA response factors.

Authors: Wendy M Reeves; Tim J Lynch; Raisa Mobin; Ruth R Finkelstein
Journal: Plant Mol Biol Date: 2011-01-19 Impact factor: 4.076

10 in total

29 in total

1. Prediction of condition-specific regulatory genes using machine learning.

Authors: Qi Song; Jiyoung Lee; Shamima Akter; Matthew Rogers; Ruth Grene; Song Li
Journal: Nucleic Acids Res Date: 2020-06-19 Impact factor: 16.971

2. Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Authors: Alessia Para; Ying Li; Amy Marshall-Colón; Kranthi Varala; Nancy J Francoeur; Tara M Moran; Molly B Edwards; Christopher Hackley; Bastiaan O R Bargmann; Kenneth D Birnbaum; W Richard McCombie; Gabriel Krouk; Gloria M Coruzzi
Journal: Proc Natl Acad Sci U S A Date: 2014-06-23 Impact factor: 11.205

Review 3. Nitrate in 2020: Thirty Years from Transport to Signaling Networks.

Authors: Elena A Vidal; José M Alvarez; Viviana Araus; Eleodoro Riveras; Matthew D Brooks; Gabriel Krouk; Sandrine Ruffel; Laurence Lejay; Nigel M Crawford; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal: Plant Cell Date: 2020-03-13 Impact factor: 11.277

4. Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.

Authors: Mariana Obertello; Stuti Shrivastava; Manpreet S Katari; Gloria M Coruzzi
Journal: Plant Physiol Date: 2015-06-04 Impact factor: 8.340

5. Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.

Authors: Erin E Sparks; Colleen Drapek; Allison Gaudinier; Song Li; Mitra Ansariola; Ning Shen; Jessica H Hennacy; Jingyuan Zhang; Gina Turco; Jalean J Petricka; Jessica Foret; Alexander J Hartemink; Raluca Gordân; Molly Megraw; Siobhan M Brady; Philip N Benfey
Journal: Dev Cell Date: 2016-10-27 Impact factor: 12.270

6. TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.

Authors: Sikander Pal; Mushtak Kisko; Christian Dubos; Benoit Lacombe; Pierre Berthomieu; Gabriel Krouk; Hatem Rouached
Journal: Plant Physiol Date: 2017-08-21 Impact factor: 8.340

7. SDG8-Mediated Histone Methylation and RNA Processing Function in the Response to Nitrate Signaling.

Authors: Ying Li; Matthew Brooks; Jenny Yeoh-Wang; Rachel M McCoy; Tara M Rock; Angelo Pasquino; Chang In Moon; Ryan M Patrick; Milos Tanurdzic; Sandrine Ruffel; Joshua R Widhalm; W Richard McCombie; Gloria M Coruzzi
Journal: Plant Physiol Date: 2019-10-22 Impact factor: 8.340