Literature DB >> 19939945

A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Sandrine Ruffel1, Gabriel Krouk, Gloria M Coruzzi.   

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Year:  2009        PMID： 19939945      PMCID： PMC2815908          DOI： 10.1104/pp.109.148502

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  44 in total

1.  A gene expression map of the Arabidopsis root.

Authors:  Kenneth Birnbaum; Dennis E Shasha; Jean Y Wang; Jee W Jung; Georgina M Lambert; David W Galbraith; Philip N Benfey
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

2.  Attacking complex problems with the power of systems biology.

Authors:  Fumiaki Katagiri
Journal:  Plant Physiol       Date:  2003-06       Impact factor: 8.340

3.  Can a biologist fix a radio?--Or, what I learned while studying apoptosis.

Authors:  Yuri Lazebnik
Journal:  Cancer Cell       Date:  2002-09       Impact factor: 31.743

4.  An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.

Authors:  Sara V Petersson; Annika I Johansson; Mariusz Kowalczyk; Alexander Makoveychuk; Jean Y Wang; Thomas Moritz; Markus Grebe; Philip N Benfey; Göran Sandberg; Karin Ljung
Journal:  Plant Cell       Date:  2009-06-02       Impact factor: 11.277

5.  Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana.

Authors:  Masami Yokota Hirai; Mitsuru Yano; Dayan B Goodenowe; Shigehiko Kanaya; Tomoko Kimura; Motoko Awazuhara; Masanori Arita; Toru Fujiwara; Kazuki Saito
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-15       Impact factor: 11.205

6.  Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis.

Authors:  John Price; Ashverya Laxmi; Steven K St Martin; Jyan-Chyun Jang
Journal:  Plant Cell       Date:  2004-07-23       Impact factor: 11.277

Review 7.  Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.

Authors:  Wolf-Rüdiger Scheible; Rosa Morcuende; Tomasz Czechowski; Christina Fritz; Daniel Osuna; Natalia Palacios-Rojas; Dana Schindelasch; Oliver Thimm; Michael K Udvardi; Mark Stitt
Journal:  Plant Physiol       Date:  2004-09       Impact factor: 8.340

8.  MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.

Authors:  Oliver Thimm; Oliver Bläsing; Yves Gibon; Axel Nagel; Svenja Meyer; Peter Krüger; Joachim Selbig; Lukas A Müller; Seung Y Rhee; Mark Stitt
Journal:  Plant J       Date:  2004-03       Impact factor: 6.417

9.  A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.

Authors:  Yves Gibon; Oliver E Blaesing; Jan Hannemann; Petronia Carillo; Melanie Höhne; Janneke H M Hendriks; Natalia Palacios; Joanna Cross; Joachim Selbig; Mark Stitt
Journal:  Plant Cell       Date:  2004-11-17       Impact factor: 11.277

10.  Genome-wide investigation of light and carbon signaling interactions in Arabidopsis.

Authors:  Karen E Thum; Michael J Shin; Peter M Palenchar; Andrei Kouranov; Gloria M Coruzzi
Journal:  Genome Biol       Date:  2004-01-27       Impact factor: 13.583
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  12 in total

1.  Increased phloem transport of S-methylmethionine positively affects sulfur and nitrogen metabolism and seed development in pea plants.

Authors:  Qiumin Tan; Lizhi Zhang; Jan Grant; Pauline Cooper; Mechthild Tegeder
Journal:  Plant Physiol       Date:  2010-10-05       Impact factor: 8.340

2.  Discover and connect cellular signaling.

Authors:  Jen Sheen
Journal:  Plant Physiol       Date:  2010-10       Impact factor: 8.340

Review 3.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; Dinesh Pandey
Journal:  OMICS       Date:  2015-10

Review 4.  Integrative systems biology: an attempt to describe a simple weed.

Authors:  Louisa M Liberman; Rosangela Sozzani; Philip N Benfey
Journal:  Curr Opin Plant Biol       Date:  2012-01-23       Impact factor: 7.834

Review 5.  Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere.

Authors:  Kristine Hill; Silvana Porco; Guillaume Lobet; Susan Zappala; Sacha Mooney; Xavier Draye; Malcolm J Bennett
Journal:  Plant Physiol       Date:  2013-10-18       Impact factor: 8.340

6.  TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Authors:  Bastiaan O R Bargmann; Amy Marshall-Colon; Idan Efroni; Sandrine Ruffel; Kenneth D Birnbaum; Gloria M Coruzzi; Gabriel Krouk
Journal:  Mol Plant       Date:  2013-01-18       Impact factor: 13.164

Review 7.  The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager.

Authors:  Sabrina E Sanchez; Steve A Kay
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-12-01       Impact factor: 10.005

8.  Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Authors:  Mariana Obertello; Gabriel Krouk; Manpreet S Katari; Suzan J Runko; Gloria M Coruzzi
Journal:  BMC Syst Biol       Date:  2010-08-12

9.  Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Authors:  Gabriel Krouk; Piotr Mirowski; Yann LeCun; Dennis E Shasha; Gloria M Coruzzi
Journal:  Genome Biol       Date:  2010-12-23       Impact factor: 13.583

10.  Gene regulatory networks in plants: learning causality from time and perturbation.

Authors:  Gabriel Krouk; Jesse Lingeman; Amy Marshall Colon; Gloria Coruzzi; Dennis Shasha
Journal:  Genome Biol       Date:  2013-06-27       Impact factor: 13.583
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