Literature DB >> 2333297

Metastability of the folded states of globular proteins.

J D Honeycutt1, D Thirumalai.   

Abstract

The possibility that several metastable minima exist in which the folded forms of a polypeptide chain have similar structural characteristics but different energies is suggested. The validity of this hypothesis is illustrated with the aid of simulation methods on a model protein that folds into a beta-barrel structure. Some implications of this hypothesis such as the existence of multiple pathways with intermediates for protein folding are discussed.

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Year:  1990        PMID: 2333297      PMCID: PMC53934          DOI: 10.1073/pnas.87.9.3526

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  On the Structure of Native, Denatured, and Coagulated Proteins.

Authors:  A E Mirsky; L Pauling
Journal:  Proc Natl Acad Sci U S A       Date:  1936-07       Impact factor: 11.205

2.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

Review 3.  Experimental and theoretical aspects of protein folding.

Authors:  C B Anfinsen; H A Scheraga
Journal:  Adv Protein Chem       Date:  1975

4.  Packing structures and transitions in liquids and solids.

Authors:  F H Stillinger; T A Weber
Journal:  Science       Date:  1984-09-07       Impact factor: 47.728

5.  Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin.

Authors:  R Elber; M Karplus
Journal:  Science       Date:  1987-01-16       Impact factor: 47.728

6.  Monte Carlo simulations of the folding of beta-barrel globular proteins.

Authors:  J Skolnick; A Kolinski; R Yaris
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

Review 7.  Acquisition of three-dimensional structure of proteins.

Authors:  D B Wetlaufer; S Ristow
Journal:  Annu Rev Biochem       Date:  1973       Impact factor: 23.643

8.  Is there a single pathway for the folding of a polypeptide chain?

Authors:  S C Harrison; R Durbin
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

9.  Principles that govern the folding of protein chains.

Authors:  C B Anfinsen
Journal:  Science       Date:  1973-07-20       Impact factor: 47.728

10.  Spin glasses and the statistical mechanics of protein folding.

Authors:  J D Bryngelson; P G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

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  53 in total

1.  What is the role of non-native intermediates of beta-lactoglobulin in protein folding?

Authors:  G Chikenji; M Kikuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Conformational propagation with prion-like characteristics in a simple model of protein folding.

Authors:  P M Harrison; H S Chan; S B Prusiner; F E Cohen
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  Coarse-grained sequences for protein folding and design.

Authors:  Scott Brown; Nicolas J Fawzi; Teresa Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

4.  Intermediates and the folding of proteins L and G.

Authors:  Scott Brown; Teresa Head-Gordon
Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

5.  Protein thermodynamics: Are native proteins metastable?

Authors:  D Thirumalai; G Reddy
Journal:  Nat Chem       Date:  2011-11-23       Impact factor: 24.427

Review 6.  Capturing the essence of folding and functions of biomolecules using coarse-grained models.

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Nat Commun       Date:  2011-09-27       Impact factor: 14.919

7.  Recovering physical potentials from a model protein databank.

Authors:  J W Mullinax; W G Noid
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

8.  Structural comparison of the two alternative transition states for folding of TI I27.

Authors:  Christian D Geierhaas; Robert B Best; Emanuele Paci; Michele Vendruscolo; Jane Clarke
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

9.  Topographical complexity of multidimensional energy landscapes.

Authors:  Gareth J Rylance; Roy L Johnston; Yasuhiro Matsunaga; Chun-Biu Li; Akinori Baba; Tamiki Komatsuzaki
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-28       Impact factor: 11.205

10.  Factors governing helix formation in peptides confined to carbon nanotubes.

Authors:  Edward P O'Brien; George Stan; D Thirumalai; Bernard R Brooks
Journal:  Nano Lett       Date:  2008-09-26       Impact factor: 11.189

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