Literature DB >> 23323846

Dissecting single-molecule signal transduction in carbon nanotube circuits with protein engineering.

Yongki Choi1, Tivoli J Olsen, Patrick C Sims, Issa S Moody, Brad L Corso, Mytrang N Dang, Gregory A Weiss, Philip G Collins.   

Abstract

Single-molecule experimental methods have provided new insights into biomolecular function, dynamic disorder, and transient states that are all invisible to conventional measurements. A novel, nonfluorescent single-molecule technique involves attaching single molecules to single-walled carbon nanotube field-effective transistors (SWNT FETs). These ultrasensitive electronic devices provide long-duration, label-free monitoring of biomolecules and their dynamic motions. However, generalization of the SWNT FET technique first requires design rules that can predict the success and applicability of these devices. Here, we report on the transduction mechanism linking enzymatic processivity to electrical signal generation by a SWNT FET. The interaction between SWNT FETs and the enzyme lysozyme was systematically dissected using eight different lysozyme variants synthesized by protein engineering. The data prove that effective signal generation can be accomplished using a single charged amino acid, when appropriately located, providing a foundation to widely apply SWNT FET sensitivity to other biomolecular systems.

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Year:  2013        PMID: 23323846      PMCID: PMC3575522          DOI: 10.1021/nl304209p

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  35 in total

1.  Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species.

Authors:  Y Cui; Q Wei; H Park; C M Lieber
Journal:  Science       Date:  2001-08-17       Impact factor: 47.728

2.  Bunching effect in single-molecule T4 lysozyme nonequilibrium conformational dynamics under enzymatic reactions.

Authors:  Yuanmin Wang; H Peter Lu
Journal:  J Phys Chem B       Date:  2010-05-20       Impact factor: 2.991

3.  Modeling the electrostatic signature of single enzyme activity.

Authors:  Landon Prisbrey; Guenter Schneider; Ethan Minot
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

4.  Influence of electrolyte composition on liquid-gated carbon nanotube and graphene transistors.

Authors:  Iddo Heller; Sohail Chatoor; Jaan Männik; Marcel A G Zevenbergen; Cees Dekker; Serge G Lemay
Journal:  J Am Chem Soc       Date:  2010-11-15       Impact factor: 15.419

5.  Low-frequency current fluctuations in individual semiconducting single-wall carbon nanotubes.

Authors:  Yu-Ming Lin; Joerg Appenzeller; Joachim Knoch; Zhihong Chen; Phaedon Avouris
Journal:  Nano Lett       Date:  2006-05       Impact factor: 11.189

Review 6.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

7.  Single-molecule lysozyme dynamics monitored by an electronic circuit.

Authors:  Yongki Choi; Issa S Moody; Patrick C Sims; Steven R Hunt; Brad L Corso; Israel Perez; Gregory A Weiss; Philip G Collins
Journal:  Science       Date:  2012-01-20       Impact factor: 47.728

8.  A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme.

Authors:  R Kuroki; L H Weaver; B W Matthews
Journal:  Science       Date:  1993-12-24       Impact factor: 47.728

9.  Debye screening in single-molecule carbon nanotube field-effect sensors.

Authors:  Sebastian Sorgenfrei; Chien-Yang Chiu; Matthew Johnston; Colin Nuckolls; Kenneth L Shepard
Journal:  Nano Lett       Date:  2011-08-01       Impact factor: 11.189

10.  Structure from function: screening structural models with functional data.

Authors:  L Jin; F E Cohen; J A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

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  20 in total

1.  Real-time monitoring of conformational transitions of single-molecule histone deacetylase 8 with nanocircuits.

Authors:  Seungyong You; James Froberg; Junru Yu; Manas Haldar; Abbas Sedigh; Sanku Mallik; D K Srivastava; Yongki Choi
Journal:  Chem Commun (Camb)       Date:  2017-03-16       Impact factor: 6.222

Review 2.  Local heating of molecular motors using single carbon nanotubes.

Authors:  Yuichi Inoue; Akihiko Ishijima
Journal:  Biophys Rev       Date:  2016-01-06

3.  Nanoelectronic Discrimination of Nonmalignant and Malignant Cells Using Nanotube Field-Effect Transistors.

Authors:  Guilherme O Silva; Zachary P Michael; Long Bian; Galina V Shurin; Marcelo Mulato; Michael R Shurin; Alexander Star
Journal:  ACS Sens       Date:  2017-08-09       Impact factor: 7.711

4.  Real-time tracking of single-molecule collagenase on native collagen and partially structured collagen-mimic substrates.

Authors:  James Froberg; Woo-Sik Choi; Abbas Sedigh; Tayebeh Anajafi; Jasmin Farmakes; Zhongyu Yang; Sanku Mallik; D K Srivastava; Yongki Choi
Journal:  Chem Commun (Camb)       Date:  2018-09-11       Impact factor: 6.222

Review 5.  Critical Review: digital resolution biomolecular sensing for diagnostics and life science research.

Authors:  Qinglan Huang; Nantao Li; Hanyuan Zhang; Congnyu Che; Fu Sun; Yanyu Xiong; Taylor D Canady; Brian T Cunningham
Journal:  Lab Chip       Date:  2020-07-23       Impact factor: 6.799

6.  Processive Incorporation of Deoxynucleoside Triphosphate Analogs by Single-Molecule DNA Polymerase I (Klenow Fragment) Nanocircuits.

Authors:  Kaitlin M Pugliese; O Tolga Gul; Yongki Choi; Tivoli J Olsen; Patrick C Sims; Philip G Collins; Gregory A Weiss
Journal:  J Am Chem Soc       Date:  2015-07-17       Impact factor: 15.419

7.  Quantifying the effect of ionic screening with protein-decorated graphene transistors.

Authors:  Jinglei Ping; Jin Xi; Jeffery G Saven; Renyu Liu; A T Charlie Johnson
Journal:  Biosens Bioelectron       Date:  2015-11-19       Impact factor: 10.618

8.  Observing lysozyme's closing and opening motions by high-resolution single-molecule enzymology.

Authors:  Maxim V Akhterov; Yongki Choi; Tivoli J Olsen; Patrick C Sims; Mariam Iftikhar; O Tolga Gul; Brad L Corso; Gregory A Weiss; Philip G Collins
Journal:  ACS Chem Biol       Date:  2015-03-20       Impact factor: 5.100

9.  Complementary Metal-Oxide-Semiconductor Integrated Carbon Nanotube Arrays: Toward Wide-Bandwidth Single-Molecule Sensing Systems.

Authors:  Steven B Warren; Sefi Vernick; Ethan Romano; Kenneth L Shepard
Journal:  Nano Lett       Date:  2016-03-24       Impact factor: 11.189

10.  Single molecule recordings of lysozyme activity.

Authors:  Yongki Choi; Gregory A Weiss; Philip G Collins
Journal:  Phys Chem Chem Phys       Date:  2013-09-28       Impact factor: 3.676

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