Literature DB >> 23752924

Single molecule recordings of lysozyme activity.

Yongki Choi1, Gregory A Weiss, Philip G Collins.   

Abstract

Single molecule bioelectronic circuits provide an opportunity to study chemical kinetics and kinetic variability with bond-by-bond resolution. To demonstrate this approach, we examined the catalytic activity of T4 lysozyme processing peptidoglycan substrates. Monitoring a single lysozyme molecule through changes in a circuit's conductance helped elucidate unexplored and previously invisible aspects of lysozyme's catalytic mechanism and demonstrated lysozyme to be a processive enzyme governed by 9 independent time constants. The variation of each time constant with pH or substrate crosslinking provided different insights into catalytic activity and dynamic disorder. Overall, ten lysozyme variants were synthesized and tested in single molecule circuits to dissect the transduction of chemical activity into electronic signals. Measurements show that a single amino acid with the appropriate properties is sufficient for good signal generation, proving that the single molecule circuit technique can be easily extended to other proteins.

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Year:  2013        PMID: 23752924      PMCID: PMC3750062          DOI: 10.1039/c3cp51356d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  71 in total

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Journal:  Science       Date:  2001-08-17       Impact factor: 47.728

2.  Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

3.  Modeling the electrostatic signature of single enzyme activity.

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Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

4.  Influence of electrolyte composition on liquid-gated carbon nanotube and graphene transistors.

Authors:  Iddo Heller; Sohail Chatoor; Jaan Männik; Marcel A G Zevenbergen; Cees Dekker; Serge G Lemay
Journal:  J Am Chem Soc       Date:  2010-11-15       Impact factor: 15.419

5.  Structure of a stabilizing disulfide bridge mutant that closes the active-site cleft of T4 lysozyme.

Authors:  R H Jacobson; M Matsumura; H R Faber; B W Matthews
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

6.  Mechanism-guided improvements to the single molecule oxidation of carbon nanotube sidewalls.

Authors:  John G Coroneus; Brett R Goldsmith; Jorge A Lamboy; Alexander A Kane; Philip G Collins; Gregory A Weiss
Journal:  Chemphyschem       Date:  2008-05-16       Impact factor: 3.102

7.  Single-molecule lysozyme dynamics monitored by an electronic circuit.

Authors:  Yongki Choi; Issa S Moody; Patrick C Sims; Steven R Hunt; Brad L Corso; Israel Perez; Gregory A Weiss; Philip G Collins
Journal:  Science       Date:  2012-01-20       Impact factor: 47.728

8.  A covalent enzyme-substrate intermediate with saccharide distortion in a mutant T4 lysozyme.

Authors:  R Kuroki; L H Weaver; B W Matthews
Journal:  Science       Date:  1993-12-24       Impact factor: 47.728

9.  Debye screening in single-molecule carbon nanotube field-effect sensors.

Authors:  Sebastian Sorgenfrei; Chien-Yang Chiu; Matthew Johnston; Colin Nuckolls; Kenneth L Shepard
Journal:  Nano Lett       Date:  2011-08-01       Impact factor: 11.189

10.  An investigation of the mechanisms of electronic sensing of protein adsorption on carbon nanotube devices.

Authors:  Robert J Chen; Hee Cheul Choi; Sarunya Bangsaruntip; Erhan Yenilmez; Xiaowu Tang; Qian Wang; Ying-Lan Chang; Hongjie Dai
Journal:  J Am Chem Soc       Date:  2004-02-11       Impact factor: 15.419

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  2 in total

1.  Different Single-Enzyme Conformational Dynamics upon Binding Hydrolyzable or Nonhydrolyzable Ligands.

Authors:  Sung Oh Woo; Myungkeun Oh; Lina Alhalhooly; Jasmin Farmakes; Arith J Rajapakse; Zhongyu Yang; Philip G Collins; Yongki Choi
Journal:  J Phys Chem B       Date:  2021-05-26       Impact factor: 3.466

2.  Probing protein multidimensional conformational fluctuations by single-molecule multiparameter photon stamping spectroscopy.

Authors:  Maolin Lu; H Peter Lu
Journal:  J Phys Chem B       Date:  2014-10-03       Impact factor: 2.991

  2 in total

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