Literature DB >> 22267809

Single-molecule lysozyme dynamics monitored by an electronic circuit.

Yongki Choi1, Issa S Moody, Patrick C Sims, Steven R Hunt, Brad L Corso, Israel Perez, Gregory A Weiss, Philip G Collins.   

Abstract

Tethering a single lysozyme molecule to a carbon nanotube field-effect transistor produced a stable, high-bandwidth transducer for protein motion. Electronic monitoring during 10-minute periods extended well beyond the limitations of fluorescence techniques to uncover dynamic disorder within a single molecule and establish lysozyme as a processive enzyme. On average, 100 chemical bonds are processively hydrolyzed, at 15-hertz rates, before lysozyme returns to its nonproductive, 330-hertz hinge motion. Statistical analysis differentiated single-step hinge closure from enzyme opening, which requires two steps. Seven independent time scales governing lysozyme's activity were observed. The pH dependence of lysozyme activity arises not from changes to its processive kinetics but rather from increasing time spent in either nonproductive rapid motions or an inactive, closed conformation.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22267809      PMCID: PMC3914775          DOI: 10.1126/science.1214824

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  54 in total

1.  Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species.

Authors:  Y Cui; Q Wei; H Park; C M Lieber
Journal:  Science       Date:  2001-08-17       Impact factor: 47.728

2.  Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors.

Authors:  Robert J Chen; Sarunya Bangsaruntip; Katerina A Drouvalakis; Nadine Wong Shi Kam; Moonsub Shim; Yiming Li; Woong Kim; Paul J Utz; Hongjie Dai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

3.  Modeling the electrostatic signature of single enzyme activity.

Authors:  Landon Prisbrey; Guenter Schneider; Ethan Minot
Journal:  J Phys Chem B       Date:  2010-03-11       Impact factor: 2.991

4.  The role of metal-nanotube contact in the performance of carbon nanotube field-effect transistors.

Authors:  Zhihong Chen; Joerg Appenzeller; Joachim Knoch; Yu-ming Lin; Phaedon Avouris
Journal:  Nano Lett       Date:  2005-07       Impact factor: 11.189

5.  Detection, stimulation, and inhibition of neuronal signals with high-density nanowire transistor arrays.

Authors:  Fernando Patolsky; Brian P Timko; Guihua Yu; Ying Fang; Andrew B Greytak; Gengfeng Zheng; Charles M Lieber
Journal:  Science       Date:  2006-08-25       Impact factor: 47.728

6.  Mechanism-guided improvements to the single molecule oxidation of carbon nanotube sidewalls.

Authors:  John G Coroneus; Brett R Goldsmith; Jorge A Lamboy; Alexander A Kane; Philip G Collins; Gregory A Weiss
Journal:  Chemphyschem       Date:  2008-05-16       Impact factor: 3.102

7.  Recent progress in carbon nanotube-based gas sensors.

Authors:  Ting Zhang; Syed Mubeen; Nosang V Myung; Marc A Deshusses
Journal:  Nanotechnology       Date:  2008-07-07       Impact factor: 3.874

8.  Debye screening in single-molecule carbon nanotube field-effect sensors.

Authors:  Sebastian Sorgenfrei; Chien-Yang Chiu; Matthew Johnston; Colin Nuckolls; Kenneth L Shepard
Journal:  Nano Lett       Date:  2011-08-01       Impact factor: 11.189

9.  A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis.

Authors:  Gira Bhabha; Jeeyeon Lee; Damian C Ekiert; Jongsik Gam; Ian A Wilson; H Jane Dyson; Stephen J Benkovic; Peter E Wright
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

10.  An investigation of the mechanisms of electronic sensing of protein adsorption on carbon nanotube devices.

Authors:  Robert J Chen; Hee Cheul Choi; Sarunya Bangsaruntip; Erhan Yenilmez; Xiaowu Tang; Qian Wang; Ying-Lan Chang; Hongjie Dai
Journal:  J Am Chem Soc       Date:  2004-02-11       Impact factor: 15.419

View more
  59 in total

1.  Biochemistry. Enzymes in coherent motion.

Authors:  H Peter Lu
Journal:  Science       Date:  2012-01-20       Impact factor: 47.728

2.  Protein Detection using Quadratic Fit Analysis Near Dirac Point of Graphene Field Effect Biosensors.

Authors:  Sung Oh Woo; James Froberg; Yanxiong Pan; Sakurako Tani; Brett R Goldsmith; Zhongyu Yang; Yongki Choi
Journal:  ACS Appl Electron Mater       Date:  2020-03-09

3.  Real-time monitoring of conformational transitions of single-molecule histone deacetylase 8 with nanocircuits.

Authors:  Seungyong You; James Froberg; Junru Yu; Manas Haldar; Abbas Sedigh; Sanku Mallik; D K Srivastava; Yongki Choi
Journal:  Chem Commun (Camb)       Date:  2017-03-16       Impact factor: 6.222

4.  Bayesian-Estimated Hierarchical HMMs Enable Robust Analysis of Single-Molecule Kinetic Heterogeneity.

Authors:  Jason Hon; Ruben L Gonzalez
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

5.  Test of normality for integrated change point detection and mixture modeling.

Authors:  S P Parsons; J D Huizinga
Journal:  J Membr Biol       Date:  2012-10-16       Impact factor: 1.843

6.  Direct observation of T4 lysozyme hinge-bending motion by fluorescence correlation spectroscopy.

Authors:  Robel B Yirdaw; Hassane S McHaourab
Journal:  Biophys J       Date:  2012-10-02       Impact factor: 4.033

7.  DNA sequencing using electrical conductance measurements of a DNA polymerase.

Authors:  Yu-Shiun Chen; Chia-Hui Lee; Meng-Yen Hung; Hsu-An Pan; Jin-Chern Chiou; G Steven Huang
Journal:  Nat Nanotechnol       Date:  2013-05-05       Impact factor: 39.213

8.  Electrically Controllable Single-Point Covalent Functionalization of Spin-Cast Carbon-Nanotube Field-Effect Transistor Arrays.

Authors:  Yoonhee Lee; Scott M Trocchia; Steven B Warren; Erik F Young; Sefi Vernick; Kenneth L Shepard
Journal:  ACS Nano       Date:  2018-10-03       Impact factor: 15.881

9.  Dissecting single-molecule signal transduction in carbon nanotube circuits with protein engineering.

Authors:  Yongki Choi; Tivoli J Olsen; Patrick C Sims; Issa S Moody; Brad L Corso; Mytrang N Dang; Gregory A Weiss; Philip G Collins
Journal:  Nano Lett       Date:  2013-01-24       Impact factor: 11.189

10.  Observing lysozyme's closing and opening motions by high-resolution single-molecule enzymology.

Authors:  Maxim V Akhterov; Yongki Choi; Tivoli J Olsen; Patrick C Sims; Mariam Iftikhar; O Tolga Gul; Brad L Corso; Gregory A Weiss; Philip G Collins
Journal:  ACS Chem Biol       Date:  2015-03-20       Impact factor: 5.100

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.