Literature DB >> 23304379

Automatic adverse drug events detection using letters to the editor.

Chao Yang1, Padmini Srinivasan, Philip M Polgreen.   

Abstract

We present and test the intuition that letters to the editor in journals carry early signals of adverse drug events (ADEs). Surprisingly these letters have not yet been exploited for automatic ADE detection unlike for example, clinical records and PubMed. Part of the challenge is that it is not easy to access the full-text of letters (for the most part these do not appear in PubMed). Also letters are likely underrated in comparison with full articles. Besides demonstrating that this intuition holds we contribute techniques for post market drug surveillance. Specifically, we test an automatic approach for ADE detection from letters using off-the-shelf machine learning tools. We also involve natural language processing for feature definitions. Overall we achieve high accuracy in our experiments and our method also works well on a second new test set. Our results encourage us to further pursue this line of research.

Mesh:

Year:  2012        PMID: 23304379      PMCID: PMC3540506     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  14 in total

1.  Use of proportional reporting ratios (PRRs) for signal generation from spontaneous adverse drug reaction reports.

Authors:  S J Evans; P C Waller; S Davis
Journal:  Pharmacoepidemiol Drug Saf       Date:  2001 Oct-Nov       Impact factor: 2.890

2.  Use of screening algorithms and computer systems to efficiently signal higher-than-expected combinations of drugs and events in the US FDA's spontaneous reports database.

Authors:  Ana Szarfman; Stella G Machado; Robert T O'Neill
Journal:  Drug Saf       Date:  2002       Impact factor: 5.606

3.  Exploring semantic groups through visual approaches.

Authors:  Olivier Bodenreider; Alexa T McCray
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

Review 4.  The reporting odds ratio and its advantages over the proportional reporting ratio.

Authors:  Kenneth J Rothman; Stephan Lanes; Susan T Sacks
Journal:  Pharmacoepidemiol Drug Saf       Date:  2004-08       Impact factor: 2.890

5.  A drug-adverse event extraction algorithm to support pharmacovigilance knowledge mining from PubMed citations.

Authors:  Wei Wang; Krystl Haerian; Hojjat Salmasian; Rave Harpaz; Herbert Chase; Carol Friedman
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

6.  Extraction of adverse drug effects from clinical records.

Authors:  Eiji Aramaki; Yasuhide Miura; Masatsugu Tonoike; Tomoko Ohkuma; Hiroshi Masuichi; Kayo Waki; Kazuhiko Ohe
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7.  Classifying disease outbreak reports using n-grams and semantic features.

Authors:  Mike Conway; Son Doan; Ai Kawazoe; Nigel Collier
Journal:  Int J Med Inform       Date:  2009-05-15       Impact factor: 4.046

8.  Active computerized pharmacovigilance using natural language processing, statistics, and electronic health records: a feasibility study.

Authors:  Xiaoyan Wang; George Hripcsak; Marianthi Markatou; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

9.  A Bayesian neural network method for adverse drug reaction signal generation.

Authors:  A Bate; M Lindquist; I R Edwards; S Olsson; R Orre; A Lansner; R M De Freitas
Journal:  Eur J Clin Pharmacol       Date:  1998-06       Impact factor: 2.953

10.  Using information mining of the medical literature to improve drug safety.

Authors:  Kanaka D Shetty; Siddhartha R Dalal
Journal:  J Am Med Inform Assoc       Date:  2011-05-05       Impact factor: 4.497

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  4 in total

1.  Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies.

Authors:  Rainer Winnenburg; Alfred Sorbello; Anna Ripple; Rave Harpaz; Joseph Tonning; Ana Szarfman; Henry Francis; Olivier Bodenreider
Journal:  J Biomed Inform       Date:  2015-09-02       Impact factor: 6.317

2.  Automatically Recognizing Medication and Adverse Event Information From Food and Drug Administration's Adverse Event Reporting System Narratives.

Authors:  Balaji Polepalli Ramesh; Steven M Belknap; Zuofeng Li; Nadya Frid; Dennis P West; Hong Yu
Journal:  JMIR Med Inform       Date:  2014-06-27

3.  Mining adverse drug reactions from online healthcare forums using hidden Markov model.

Authors:  Hariprasad Sampathkumar; Xue-wen Chen; Bo Luo
Journal:  BMC Med Inform Decis Mak       Date:  2014-10-23       Impact factor: 2.796

4.  Letters to the editor on the Zika virus: a bibliometric analysis.

Authors:  Frances A Delwiche
Journal:  J Med Libr Assoc       Date:  2021-04-01
  4 in total

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