Literature DB >> 20841784

Extraction of adverse drug effects from clinical records.

Eiji Aramaki1, Yasuhide Miura, Masatsugu Tonoike, Tomoko Ohkuma, Hiroshi Masuichi, Kayo Waki, Kazuhiko Ohe.   

Abstract

With the rapidly growing use of electronic health records, the possibility of large-scale clinical information extraction has drawn much attention. We aim to extract adverse drug events and effects from records. As the first step of this challenge, this study assessed (1) how much adverse-effect information is contained in records, and (2) automatic extracting accuracy of the current standard Natural Language Processing (NLP) system. Results revealed that 7.7% of records include adverse event information, and that 59% of them (4.5% in total) can be extracted automatically. This result is particularly encouraging, considering the massive amounts of records, which are increasing daily.

Mesh:

Year:  2010        PMID: 20841784

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  37 in total

1.  Pattern mining for extraction of mentions of Adverse Drug Reactions from user comments.

Authors:  Azadeh Nikfarjam; Graciela H Gonzalez
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Developing a natural language processing application for measuring the quality of colonoscopy procedures.

Authors:  Henk Harkema; Wendy W Chapman; Melissa Saul; Evan S Dellon; Robert E Schoen; Ateev Mehrotra
Journal:  J Am Med Inform Assoc       Date:  2011-09-21       Impact factor: 4.497

3.  Portable automatic text classification for adverse drug reaction detection via multi-corpus training.

Authors:  Abeed Sarker; Graciela Gonzalez
Journal:  J Biomed Inform       Date:  2014-11-08       Impact factor: 6.317

4.  Ensemble method-based extraction of medication and related information from clinical texts.

Authors:  Youngjun Kim; Stéphane M Meystre
Journal:  J Am Med Inform Assoc       Date:  2020-01-01       Impact factor: 4.497

5.  Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings.

Authors:  Hong-Jie Dai; Chu-Hsien Su; Chi-Shin Wu
Journal:  J Am Med Inform Assoc       Date:  2020-01-01       Impact factor: 4.497

6.  A study of deep learning approaches for medication and adverse drug event extraction from clinical text.

Authors:  Qiang Wei; Zongcheng Ji; Zhiheng Li; Jingcheng Du; Jingqi Wang; Jun Xu; Yang Xiang; Firat Tiryaki; Stephen Wu; Yaoyun Zhang; Cui Tao; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2020-01-01       Impact factor: 4.497

Review 7.  Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review.

Authors:  Yuan Luo; William K Thompson; Timothy M Herr; Zexian Zeng; Mark A Berendsen; Siddhartha R Jonnalagadda; Matthew B Carson; Justin Starren
Journal:  Drug Saf       Date:  2017-11       Impact factor: 5.606

8.  Automatic adverse drug events detection using letters to the editor.

Authors:  Chao Yang; Padmini Srinivasan; Philip M Polgreen
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

Review 9.  Recent Advances in Clinical Natural Language Processing in Support of Semantic Analysis.

Authors:  S Velupillai; D Mowery; B R South; M Kvist; H Dalianis
Journal:  Yearb Med Inform       Date:  2015-08-13

10.  Identifying Drug-Induced Liver Illness (DILI) with Computerized Information Extraction: No More Dilly-Dallying.

Authors:  H Shen; A Monto
Journal:  Dig Dis Sci       Date:  2017-03       Impact factor: 3.199

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