Literature DB >> 23304293

New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content.

James Geller1, Christopher Ochs, Yehoshua Perl, Junchuan Xu.   

Abstract

Medical terminologies are large and complex. Frequently, errors are hidden in this complexity. Our objective is to find such errors, which can be aided by deriving abstraction networks from a large terminology. Abstraction networks preserve important features but eliminate many minor details, which are often not useful for identifying errors. Providing visualizations for such abstraction networks aids auditors by allowing them to quickly focus on elements of interest within a terminology. Previously we introduced area taxonomies and partial area taxonomies for SNOMED CT. In this paper, two advanced, novel kinds of abstraction networks, the relationship-constrained partial area subtaxonomy and the root-constrained partial area subtaxonomy are defined and their benefits are demonstrated. We also describe BLUSNO, an innovative software tool for quickly generating and visualizing these SNOMED CT abstraction networks. BLUSNO is a dynamic, interactive system that provides quick access to well organized information about SNOMED CT.

Mesh:

Year:  2012        PMID: 23304293      PMCID: PMC3540556     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Structural methodologies for auditing SNOMED.

Authors:  Yue Wang; Michael Halper; Hua Min; Yehoshua Perl; Yan Chen; Kent A Spackman
Journal:  J Biomed Inform       Date:  2006-12-24       Impact factor: 6.317

2.  Analysis of error concentrations in SNOMED.

Authors:  Michael Halper; Yue Wang; Hua Min; Yan Chen; George Hripcsak; Yehoshua Perl; Kent A Spackman
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

3.  Getting the foot out of the pelvis: modeling problems affecting use of SNOMED CT hierarchies in practical applications.

Authors:  Alan L Rector; Sam Brandt; Thomas Schneider
Journal:  J Am Med Inform Assoc       Date:  2011-04-21       Impact factor: 4.497

4.  A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality.

Authors:  Gai Elhanan; Yehoshua Perl; James Geller
Journal:  J Am Med Inform Assoc       Date:  2011-08-11       Impact factor: 4.497

5.  Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED.

Authors:  Yue Wang; Michael Halper; Duo Wei; Yehoshua Perl; James Geller
Journal:  J Biomed Inform       Date:  2011-08-25       Impact factor: 6.317

Review 6.  Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.

Authors:  Yue Wang; Michael Halper; Duo Wei; Huanying Gu; Yehoshua Perl; Junchuan Xu; Gai Elhanan; Yan Chen; Kent A Spackman; James T Case; George Hripcsak
Journal:  J Biomed Inform       Date:  2011-09-01       Impact factor: 6.317

7.  The Neighborhood Auditing Tool: a hybrid interface for auditing the UMLS.

Authors:  C Paul Morrey; James Geller; Michael Halper; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2009-06       Impact factor: 6.317

8.  Detecting role errors in the gene hierarchy of the NCI Thesaurus.

Authors:  Hua Min; Barry Cohen; Michael Halper; Marc Oren; Yehoshua Perl
Journal:  Cancer Inform       Date:  2008

9.  Ontological analysis of SNOMED CT.

Authors:  Gergely Héja; György Surján; Péter Varga
Journal:  BMC Med Inform Decis Mak       Date:  2008-10-27       Impact factor: 2.796

  9 in total
  13 in total

1.  Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.

Authors:  Christopher Ochs; Yehoshua Perl; James Geller; Melissa Haendel; Matthew Brush; Sivaram Arabandi; Samson Tu
Journal:  J Biomed Inform       Date:  2015-06-03       Impact factor: 6.317

2.  An empirically derived taxonomy of errors in SNOMED CT.

Authors:  Jonathan M Mortensen; Mark A Musen; Natalya F Noy
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

3.  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Ankur Agrawal; James T Case; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2014-10-20       Impact factor: 4.497

4.  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Junchuan Xu; Hua Min; James T Case; Zhi Wei
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

5.  Tracking the Remodeling of SNOMED CT's Bacterial Infectious Diseases.

Authors:  Christopher Ochs; James T Case; Yehoshua Perl
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

6.  A family-based framework for supporting quality assurance of biomedical ontologies in BioPortal.

Authors:  Zhe He; Christopher Ochs; Ankur Agrawal; Yehoshua Perl; Dimitris Zeginis; Konstantinos Tarabanis; Gai Elhanan; Michael Halper; Natasha Noy; James Geller
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

7.  Scalability of abstraction-network-based quality assurance to large SNOMED hierarchies.

Authors:  Christopher Ochs; Yehoshua Perl; James Geller; Michael Halper; Huanying Gu; Yan Chen; Gai Elhanan
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

8.  Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.

Authors:  Ling Zheng; Hasan Yumak; Ling Chen; Christopher Ochs; James Geller; Joan Kapusnik-Uner; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-07-16       Impact factor: 6.317

Review 9.  Introducing the Big Knowledge to Use (BK2U) challenge.

Authors:  Yehoshua Perl; James Geller; Michael Halper; Christopher Ochs; Ling Zheng; Joan Kapusnik-Uner
Journal:  Ann N Y Acad Sci       Date:  2016-10-17       Impact factor: 5.691

10.  A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Mark A Musen
Journal:  J Biomed Inform       Date:  2016-06-23       Impact factor: 6.317

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