Literature DB >> 28269894

Tracking the Remodeling of SNOMED CT's Bacterial Infectious Diseases.

Christopher Ochs1, James T Case2, Yehoshua Perl1.   

Abstract

SNOMED CT's content undergoes many changes from one release to the next. Over the last year SNOMED CT's Bacterial infectious disease subhierarchy has undergone significant editing to bring consistent modeling to its concepts. In this paper we analyze the stated and inferred structural modifications that affected the Bacterial infectious disease subhierarchy between the Jan 2015 and Jan 2016 SNOMED CT releases using a two-phased approach. First, we introduce a methodology for creating a human readable list of changes. Next, we utilize partial-area taxonomies, which are compact summaries of SNOMED CT's content and structure, to identify the "big picture" changes that occurred in the subhierarchy. We illustrate how partial-area taxonomies can be used to help identify groups of concepts that were affected by these editing operations and the nature of these changes. Modeling issues identified using our two-phase methodology are discussed.

Entities:  

Mesh:

Year:  2017        PMID: 28269894      PMCID: PMC5333319     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  18 in total

1.  COnto-Diff: generation of complex evolution mappings for life science ontologies.

Authors:  Michael Hartung; Anika Groß; Erhard Rahm
Journal:  J Biomed Inform       Date:  2012-05-08       Impact factor: 6.317

2.  Relationship groups in SNOMED CT.

Authors:  Ronald Cornet; Stefan Schulz
Journal:  Stud Health Technol Inform       Date:  2009

3.  Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network.

Authors:  Christopher Ochs; Yehoshua Perl; James Geller; Melissa Haendel; Matthew Brush; Sivaram Arabandi; Samson Tu
Journal:  J Biomed Inform       Date:  2015-06-03       Impact factor: 6.317

4.  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Junchuan Xu; Hua Min; James T Case; Zhi Wei
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

5.  New abstraction networks and a new visualization tool in support of auditing the SNOMED CT content.

Authors:  James Geller; Christopher Ochs; Yehoshua Perl; Junchuan Xu
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

6.  Quality assurance of the gene ontology using abstraction networks.

Authors:  Christopher Ochs; Yehoshua Perl; Michael Halper; James Geller; Jane Lomax
Journal:  J Bioinform Comput Biol       Date:  2015-11-24       Impact factor: 1.122

Review 7.  Abstraction networks for terminologies: Supporting management of "big knowledge".

Authors:  Michael Halper; Huanying Gu; Yehoshua Perl; Christopher Ochs
Journal:  Artif Intell Med       Date:  2015-04-02       Impact factor: 5.326

Review 8.  Auditing complex concepts of SNOMED using a refined hierarchical abstraction network.

Authors:  Yue Wang; Michael Halper; Duo Wei; Huanying Gu; Yehoshua Perl; Junchuan Xu; Gai Elhanan; Yan Chen; Kent A Spackman; James T Case; George Hripcsak
Journal:  J Biomed Inform       Date:  2011-09-01       Impact factor: 6.317

9.  Structural measures to track the evolution of SNOMED CT hierarchies.

Authors:  Duo Wei; Huanying Helen Gu; Yehoshua Perl; Michael Halper; Christopher Ochs; Gai Elhanan; Yan Chen
Journal:  J Biomed Inform       Date:  2015-08-07       Impact factor: 6.317

10.  Overview and utilization of the NCI thesaurus.

Authors:  Gilberto Fragoso; Sherri de Coronado; Margaret Haber; Frank Hartel; Larry Wright
Journal:  Comp Funct Genomics       Date:  2004
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  4 in total

1.  Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing.

Authors:  Ling Zheng; Hao Liu; Yehoshua Perl; James Geller; Christopher Ochs; James T Case
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.

Authors:  Ling Zheng; Yan Chen; Gai Elhanan; Yehoshua Perl; James Geller; Christopher Ochs
Journal:  J Biomed Inform       Date:  2018-05-28       Impact factor: 6.317

3.  Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta.

Authors:  Christopher Ochs; James T Case; Yehoshua Perl
Journal:  J Biomed Inform       Date:  2017-02-12       Impact factor: 6.317

4.  Missing lateral relationships in top-level concepts of an ontology.

Authors:  Ling Zheng; Yan Chen; Hua Min; P Lloyd Hildebrand; Hao Liu; Michael Halper; James Geller; Sherri de Coronado; Yehoshua Perl
Journal:  BMC Med Inform Decis Mak       Date:  2020-12-15       Impact factor: 2.796

  4 in total

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