Literature DB >> 23288349

Fungal systematics: is a new age of enlightenment at hand?

David S Hibbett1, John W Taylor.   

Abstract

Fungal taxonomists pursue a seemingly impossible quest: to discover and give names to all of the world's mushrooms, moulds and yeasts. Taxonomists have a reputation for being traditionalists, but as we outline here, the community has recently embraced the modernization of its nomenclatural rules by discarding the requirement for Latin descriptions, endorsing electronic publication and ending the dual system of nomenclature, which used different names for the sexual and asexual phases of pleomorphic species. The next, and more difficult, step will be to develop community standards for sequence-based classification.

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Year:  2013        PMID: 23288349     DOI: 10.1038/nrmicro2963

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  21 in total

Review 1.  Phylogenetic species recognition and species concepts in fungi.

Authors:  J W Taylor; D J Jacobson; S Kroken; T Kasuga; D M Geiser; D S Hibbett; M C Fisher
Journal:  Fungal Genet Biol       Date:  2000-10       Impact factor: 3.495

2.  Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Authors:  Conrad L Schoch; Keith A Seifert; Sabine Huhndorf; Vincent Robert; John L Spouge; C André Levesque; Wen Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

3.  Speciation despite globally overlapping distributions in Penicillium chrysogenum: the population genetics of Alexander Fleming's lucky fungus.

Authors:  D A Henk; C E Eagle; K Brown; M A Van Den Berg; P S Dyer; S W Peterson; M C Fisher
Journal:  Mol Ecol       Date:  2011-09-23       Impact factor: 6.185

4.  Notes on the characterization of prokaryote strains for taxonomic purposes.

Authors:  B J Tindall; R Rosselló-Móra; H-J Busse; W Ludwig; P Kämpfer
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-21       Impact factor: 2.747

5.  Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi.

Authors:  Anna Rosling; Filipa Cox; Karelyn Cruz-Martinez; Katarina Ihrmark; Gwen-Aëlle Grelet; Björn D Lindahl; Audrius Menkis; Timothy Y James
Journal:  Science       Date:  2011-08-12       Impact factor: 47.728

6.  Discovery of novel intermediate forms redefines the fungal tree of life.

Authors:  Meredith D M Jones; Irene Forn; Catarina Gadelha; Martin J Egan; David Bass; Ramon Massana; Thomas A Richards
Journal:  Nature       Date:  2011-05-11       Impact factor: 49.962

7.  Taxonomic notes: a proposal for recording the properties of putative taxa of procaryotes.

Authors:  R G Murray; K H Schleifer
Journal:  Int J Syst Bacteriol       Date:  1994-01

8.  Patterns of gene flow define species of thermophilic Archaea.

Authors:  Hinsby Cadillo-Quiroz; Xavier Didelot; Nicole L Held; Alfa Herrera; Aaron Darling; Michael L Reno; David J Krause; Rachel J Whitaker
Journal:  PLoS Biol       Date:  2012-02-21       Impact factor: 8.029

9.  A new dawn for the naming of fungi: impacts of decisions made in Melbourne in July 2011 on the future publication and regulation of fungal names.

Authors:  David L Hawksworth
Journal:  IMA Fungus       Date:  2011-11-11       Impact factor: 3.515

10.  Fleming's penicillin producing strain is not Penicillium chrysogenum but P. rubens.

Authors:  Jos Houbraken; Jens C Frisvad; Robert A Samson
Journal:  IMA Fungus       Date:  2011-06-07       Impact factor: 3.515

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  39 in total

Review 1.  Thermophilic fungi in the new age of fungal taxonomy.

Authors:  Tássio Brito de Oliveira; Eleni Gomes; Andre Rodrigues
Journal:  Extremophiles       Date:  2014-11-16       Impact factor: 2.395

Review 2.  Global food and fibre security threatened by current inefficiencies in fungal identification.

Authors:  Pedro W Crous; Johannes Z Groenewald; Bernard Slippers; Michael J Wingfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-12-05       Impact factor: 6.237

3.  Consensus statement: Virus taxonomy in the age of metagenomics.

Authors:  Peter Simmonds; Mike J Adams; Mária Benkő; Mya Breitbart; J Rodney Brister; Eric B Carstens; Andrew J Davison; Eric Delwart; Alexander E Gorbalenya; Balázs Harrach; Roger Hull; Andrew M Q King; Eugene V Koonin; Mart Krupovic; Jens H Kuhn; Elliot J Lefkowitz; Max L Nibert; Richard Orton; Marilyn J Roossinck; Sead Sabanadzovic; Matthew B Sullivan; Curtis A Suttle; Robert B Tesh; René A van der Vlugt; Arvind Varsani; F Murilo Zerbini
Journal:  Nat Rev Microbiol       Date:  2017-01-03       Impact factor: 60.633

Review 4.  Mining the oral mycobiome: Methods, components, and meaning.

Authors:  Patricia I Diaz; Bo-Young Hong; Amanda K Dupuy; Linda D Strausbaugh
Journal:  Virulence       Date:  2016-10-28       Impact factor: 5.882

Review 5.  Coccidioides ecology and genomics.

Authors:  Bridget M Barker; Anastasia P Litvintseva; Meritxell Riquelme; Lluvia Vargas-Gastélum
Journal:  Med Mycol       Date:  2019-02-01       Impact factor: 4.076

Review 6.  Infectious agents and amyotrophic lateral sclerosis: another piece of the puzzle of motor neuron degeneration.

Authors:  David Castanedo-Vazquez; Pilar Bosque-Varela; Arancha Sainz-Pelayo; Javier Riancho
Journal:  J Neurol       Date:  2018-05-29       Impact factor: 4.849

7.  High-Throughput Sequencing Reveals Drastic Changes in Fungal Communities in the Phyllosphere of Norway Spruce (Picea abies) Following Invasion of the Spruce Bud Scale (Physokermes piceae).

Authors:  Audrius Menkis; Adas Marčiulynas; Artūras Gedminas; Jūratė Lynikienė; Aistė Povilaitienė
Journal:  Microb Ecol       Date:  2015-06-09       Impact factor: 4.552

8.  Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture.

Authors:  Tom J B de Man; Jason E Stajich; Christian P Kubicek; Clotilde Teiling; Komal Chenthamara; Lea Atanasova; Irina S Druzhinina; Natasha Levenkova; Stephanie S L Birnbaum; Seth M Barribeau; Brooke A Bozick; Garret Suen; Cameron R Currie; Nicole M Gerardo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

9.  Redefining Microascus, Scopulariopsis and allied genera.

Authors:  M Sandoval-Denis; J Gené; D A Sutton; J F Cano-Lira; G S de Hoog; C A Decock; N P Wiederhold; J Guarro
Journal:  Persoonia       Date:  2015-04-15       Impact factor: 11.051

Review 10.  Fungal diagnostics.

Authors:  Thomas R Kozel; Brian Wickes
Journal:  Cold Spring Harb Perspect Med       Date:  2014-04-01       Impact factor: 6.915

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