Literature DB >> 28080994

Global food and fibre security threatened by current inefficiencies in fungal identification.

Pedro W Crous1,2,3, Johannes Z Groenewald4, Bernard Slippers5, Michael J Wingfield2.   

Abstract

Fungal pathogens severely impact global food and fibre crop security. Fungal species that cause plant diseases have mostly been recognized based on their morphology. In general, morphological descriptions remain disconnected from crucially important knowledge such as mating types, host specificity, life cycle stages and population structures. The majority of current fungal species descriptions lack even the most basic genetic data that could address at least some of these issues. Such information is essential for accurate fungal identifications, to link critical metadata and to understand the real and potential impact of fungal pathogens on production and natural ecosystems. Because international trade in plant products and introduction of pathogens to new areas is likely to continue, the manner in which fungal pathogens are identified should urgently be reconsidered. The technologies that would provide appropriate information for biosecurity and quarantine already exist, yet the scientific community and the regulatory authorities are slow to embrace them. International agreements are urgently needed to enforce new guidelines for describing plant pathogenic fungi (including key DNA information), to ensure availability of relevant data and to modernize the phytosanitary systems that must deal with the risks relating to trade-associated plant pathogens.This article is part of the themed issue 'Tackling emerging fungal threats to animal health, food security and ecosystem resilience'.
© 2016 The Author(s).

Keywords:  DNA barcoding; cryptic diversity; fungal taxonomy

Mesh:

Substances:

Year:  2016        PMID: 28080994      PMCID: PMC5095547          DOI: 10.1098/rstb.2016.0024

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  39 in total

Review 1.  One fungus, one name promotes progressive plant pathology.

Authors:  Michael J Wingfield; Z Wilhelm De Beer; Bernard Slippers; Brenda D Wingfield; Johannes Z Groenewald; Lorenzo Lombard; Pedro W Crous
Journal:  Mol Plant Pathol       Date:  2011-12-06       Impact factor: 5.663

2.  The fungi: 1, 2, 3 ... 5.1 million species?

Authors:  Meredith Blackwell
Journal:  Am J Bot       Date:  2011-03-02       Impact factor: 3.844

Review 3.  Sex in fungi.

Authors:  Min Ni; Marianna Feretzaki; Sheng Sun; Xuying Wang; Joseph Heitman
Journal:  Annu Rev Genet       Date:  2011-09-13       Impact factor: 16.830

4.  Mycosphaerella graminicola: latent infection, crop devastation and genomics.

Authors:  Claire-Louise Palmer; Wendy Skinner
Journal:  Mol Plant Pathol       Date:  2002-03-01       Impact factor: 5.663

5.  Mycosphaerella graminicola: from genomics to disease control.

Authors:  Elizabeth S Orton; Sian Deller; James K M Brown
Journal:  Mol Plant Pathol       Date:  2011-01-17       Impact factor: 5.663

6.  Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola).

Authors:  Eva H Stukenbrock; William Quaedvlieg; Mohammad Javan-Nikhah; Marcello Zala; Pedro W Crous; Bruce A McDonald
Journal:  Mycologia       Date:  2012-06-06       Impact factor: 2.696

7.  Cryptic species, native populations and biological invasions by a eucalypt forest pathogen.

Authors:  Guillermo Pérez; Bernard Slippers; Michael J Wingfield; Brenda D Wingfield; Angus J Carnegie; Treena I Burgess
Journal:  Mol Ecol       Date:  2012-08-10       Impact factor: 6.185

8.  Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts.

Authors:  W Quaedvlieg; G H J Kema; J Z Groenewald; G J M Verkley; S Seifbarghi; M Razavi; A Mirzadi Gohari; R Mehrabi; P W Crous
Journal:  Persoonia       Date:  2011-04-05       Impact factor: 11.051

9.  Recommendations for competing sexual-asexually typified generic names in Sordariomycetes (except Diaporthales, Hypocreales, and Magnaporthales).

Authors:  Martina Réblová; Andrew N Miller; Amy Y Rossman; Keith A Seifert; Pedro W Crous; David L Hawksworth; Mohamed A Abdel-Wahab; Paul F Cannon; Dinushani A Daranagama; Z Wilhelm De Beer; Shi-Ke Huang; Kevin D Hyde; Ruvvishika Jayawardena; Walter Jaklitsch; E B Gareth Jones; Yu-Ming Ju; Caroline Judith; Sajeewa S N Maharachchikumbura; Ka-Lai Pang; Liliane E Petrini; Huzefa A Raja; Andrea I Romero; Carol Shearer; Indunil C Senanayake; Hermann Voglmayr; Bevan S Weir; Nalin N Wijayawarden
Journal:  IMA Fungus       Date:  2016-06-08       Impact factor: 3.515

10.  Alternaria section Alternaria: Species, formae speciales or pathotypes?

Authors:  J H C Woudenberg; M F Seidl; J Z Groenewald; M de Vries; J B Stielow; B P H J Thomma; P W Crous
Journal:  Stud Mycol       Date:  2015-08-25       Impact factor: 16.097

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  15 in total

1.  Genera of phytopathogenic fungi: GOPHY 1.

Authors:  Y Marin-Felix; J Z Groenewald; L Cai; Q Chen; S Marincowitz; I Barnes; K Bensch; U Braun; E Camporesi; U Damm; Z W de Beer; A Dissanayake; J Edwards; A Giraldo; M Hernández-Restrepo; K D Hyde; R S Jayawardena; L Lombard; J Luangsa-Ard; A R McTaggart; A Y Rossman; M Sandoval-Denis; M Shen; R G Shivas; Y P Tan; E J van der Linde; M J Wingfield; A R Wood; J Q Zhang; Y Zhang; P W Crous
Journal:  Stud Mycol       Date:  2017-05-05       Impact factor: 16.097

2.  Foliar pathogens of eucalypts.

Authors:  P W Crous; M J Wingfield; R Cheewangkoon; A J Carnegie; T I Burgess; B A Summerell; J Edwards; P W J Taylor; J Z Groenewald
Journal:  Stud Mycol       Date:  2019-08-08       Impact factor: 16.097

3.  Species Identification in Plant-Associated Prokaryotes and Fungi Using DNA.

Authors:  Patrik Inderbitzin; Barbara Robbertse; Conrad L Schoch
Journal:  Phytobiomes J       Date:  2020-03-23

4.  Publicly Available and Validated DNA Reference Sequences Are Critical to Fungal Identification and Global Plant Protection Efforts: A Use-Case in Colletotrichum.

Authors:  Aaron H Kennedy; Conrad L Schoch; Glorimar Marrero; Vyacheslav Brover; Barbara Robbertse
Journal:  Plant Dis       Date:  2022-05-10       Impact factor: 4.614

5.  Tackling emerging fungal threats to animal health, food security and ecosystem resilience.

Authors:  Matthew C Fisher; Neil A R Gow; Sarah J Gurr
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-12-05       Impact factor: 6.237

6.  Improving taxonomic accuracy for fungi in public sequence databases: applying 'one name one species' in well-defined genera with Trichoderma/Hypocrea as a test case.

Authors:  Barbara Robbertse; Pooja K Strope; Priscila Chaverri; Romina Gazis; Stacy Ciufo; Michael Domrachev; Conrad L Schoch
Journal:  Database (Oxford)       Date:  2017-01-01       Impact factor: 3.451

7.  High species diversity in Colletotrichum associated with citrus diseases in Europe.

Authors:  V Guarnaccia; J Z Groenewald; G Polizzi; P W Crous
Journal:  Persoonia       Date:  2017-06-07       Impact factor: 11.051

8.  Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

Authors:  Robert Lücking; M Catherine Aime; Barbara Robbertse; Andrew N Miller; Hiran A Ariyawansa; Takayuki Aoki; Gianluigi Cardinali; Pedro W Crous; Irina S Druzhinina; David M Geiser; David L Hawksworth; Kevin D Hyde; Laszlo Irinyi; Rajesh Jeewon; Peter R Johnston; Paul M Kirk; Elaine Malosso; Tom W May; Wieland Meyer; Maarja Öpik; Vincent Robert; Marc Stadler; Marco Thines; Duong Vu; Andrey M Yurkov; Ning Zhang; Conrad L Schoch
Journal:  IMA Fungus       Date:  2020-07-10       Impact factor: 3.515

9.  Fungi infecting woody plants: emerging frontiers.

Authors:  P W Crous; M J Wingfield
Journal:  Persoonia       Date:  2018-05-18       Impact factor: 11.051

10.  Liberomycespistaciae sp. nov., the causal agent of pistachio cankers and decline in Italy.

Authors:  Salvatore Vitale; Dalia Aiello; Vladimiro Guarnaccia; Laura Luongo; Massimo Galli; Pedro W Crous; Giancarlo Polizzi; Alessandra Belisario; Hermann Voglmayr
Journal:  MycoKeys       Date:  2018-09-18       Impact factor: 2.984

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