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Literature DB >> 11118132

Phylogenetic species recognition and species concepts in fungi.

J W Taylor¹, D J Jacobson, S Kroken, T Kasuga, D M Geiser, D S Hibbett, M C Fisher.

Abstract

The operational species concept, i.e., the one used to recognize species, is contrasted to the theoretical species concept. A phylogenetic approach to recognize fungal species based on concordance of multiple gene genealogies is compared to those based on morphology and reproductive behavior. Examples where Phylogenetic Species Recognition has been applied to fungi are reviewed and concerns regarding Phylogenetic Species Recognition are discussed.

Mesh：

Year: 2000 PMID： 11118132 DOI： 10.1006/fgbi.2000.1228

Source DB: PubMed Journal: Fungal Genet Biol ISSN： 1087-1845 Impact factor: 3.495

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Cited

320 in total

1. Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach.

Authors: Luz B Gilbert; Lee Chae; Takao Kasuga; John W Taylor
Journal: BMC Genomics Date: 2011-09-21 Impact factor: 3.969

2. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Authors: Conrad L Schoch; Keith A Seifert; Sabine Huhndorf; Vincent Robert; John L Spouge; C André Levesque; Wen Chen
Journal: Proc Natl Acad Sci U S A Date: 2012-03-27 Impact factor: 11.205

3. Widespread occurrence of diverse human pathogenic types of the fungus Fusarium detected in plumbing drains.

Authors: Dylan P G Short; Kerry O'Donnell; Ning Zhang; Jean H Juba; David M Geiser
Journal: J Clin Microbiol Date: 2011-10-05 Impact factor: 5.948

Review 4. The dynamics of biogeographic ranges in the deep sea.

Authors: Craig R McClain; Sarah Mincks Hardy
Journal: Proc Biol Sci Date: 2010-07-28 Impact factor: 5.349

5. Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

Authors: Kerry O'Donnell; Deanna A Sutton; Michael G Rinaldi; Brice A J Sarver; S Arunmozhi Balajee; Hans-Josef Schroers; Richard C Summerbell; Vincent A R G Robert; Pedro W Crous; Ning Zhang; Takayuki Aoki; Kyongyong Jung; Jongsun Park; Yong-Hwan Lee; Seogchan Kang; Bongsoo Park; David M Geiser
Journal: J Clin Microbiol Date: 2010-08-04 Impact factor: 5.948

Phylogenetic species recognition and species concepts in fungi.

1. Array Comparative Genomic Hybridizations: assessing the ability to recapture evolutionary relationships using an in silico approach.

2. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

3. Widespread occurrence of diverse human pathogenic types of the fungus Fusarium detected in plumbing drains.

Review 4. The dynamics of biogeographic ranges in the deep sea.

5. Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

6. DNA barcoding in Mucorales: an inventory of biodiversity.

7. Hypocrea seppoi, a new stipitate species from Finland.

8. Internal transcribed spacer sequencing versus biochemical profiling for identification of medically important yeasts.

9. The genus Bipolaris.

10. Aspergillus lentulus sp. nov., a new sibling species of A. fumigatus.