Literature DB >> 23286056

Identifying sub-populations via unsupervised cluster analysis on multi-edge similarity graphs.

Madhura Ingalhalikar1, Alex R Smith, Luke Bloy, Ruben Gur, Timothy P L Roberts, Ragini Verma.   

Abstract

Pathologies like autism and schizophrenia are a broad set of disorders with multiple etiologies in the same diagnostic category. This paper presents a method for unsupervised cluster analysis using multi-edge similarity graphs that combine information from different modalities. The method alleviates the issues with traditional supervised classification methods that use diagnostic labels and are therefore unable to exploit or elucidate the underlying heterogeneity of the dataset under analysis. The framework introduced in this paper has the ability to employ diverse features that define different aspects of pathology obtained from different modalities to create a multi-edged graph on which clustering is performed. The weights on the multiple edges are optimized using a novel concept of 'holding power' that describes the certainty with which a subject belongs to a cluster. We apply the technique to two separate clinical populations of autism spectrum disorder (ASD) and schizophrenia (SCZ), where the multi-edged graph for each population is created by combining information from structural networks and cognitive scores. For the ASD-control population the method clusters the data into two classes and the SCZ-control population is clustered into four. The two classes in ASD agree with underlying diagnostic labels with 92% accuracy and the SCZ clustering agrees with 78% accuracy, indicating a greater heterogeneity in the SCZ population.

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Year:  2012        PMID: 23286056      PMCID: PMC4023482          DOI: 10.1007/978-3-642-33418-4_32

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

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Journal:  Cereb Cortex       Date:  2004-01       Impact factor: 5.357

2.  Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging.

Authors:  T E J Behrens; H Johansen-Berg; M W Woolrich; S M Smith; C A M Wheeler-Kingshott; P A Boulby; G J Barker; E L Sillery; K Sheehan; O Ciccarelli; A J Thompson; J M Brady; P M Matthews
Journal:  Nat Neurosci       Date:  2003-07       Impact factor: 24.884

Review 3.  Clustering algorithms in biomedical research: a review.

Authors:  Rui Xu; Donald C Wunsch
Journal:  IEEE Rev Biomed Eng       Date:  2010

4.  Modularity and community structure in networks.

Authors:  M E J Newman
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-24       Impact factor: 11.205

5.  COMPARE: classification of morphological patterns using adaptive regional elements.

Authors:  Yong Fan; Dinggang Shen; Ruben C Gur; Raquel E Gur; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2007-01       Impact factor: 10.048

6.  Discovering modes of an image population through mixture modeling.

Authors:  Mert R Sabuncu; Serdar K Balci; Polina Golland
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7.  Toward a universal law of generalization for psychological science.

Authors:  R N Shepard
Journal:  Science       Date:  1987-09-11       Impact factor: 47.728

8.  Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD.

Authors:  Madhura Ingalhalikar; Drew Parker; Luke Bloy; Timothy P L Roberts; Ragini Verma
Journal:  Neuroimage       Date:  2011-05-14       Impact factor: 6.556

9.  Semi-supervised cluster analysis of imaging data.

Authors:  Roman Filipovych; Susan M Resnick; Christos Davatzikos
Journal:  Neuroimage       Date:  2010-10-07       Impact factor: 6.556

  9 in total
  8 in total

1.  Motor signatures in autism spectrum disorder: the importance of variability.

Authors:  Valentina Parma; Ashley B de Marchena
Journal:  J Neurophysiol       Date:  2015-08-12       Impact factor: 2.714

Review 2.  Neural signatures of autism spectrum disorders: insights into brain network dynamics.

Authors:  Leanna M Hernandez; Jeffrey D Rudie; Shulamite A Green; Susan Bookheimer; Mirella Dapretto
Journal:  Neuropsychopharmacology       Date:  2014-07-11       Impact factor: 7.853

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Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

4.  Functional connectivity classification of autism identifies highly predictive brain features but falls short of biomarker standards.

Authors:  Mark Plitt; Kelly Anne Barnes; Alex Martin
Journal:  Neuroimage Clin       Date:  2014-12-24       Impact factor: 4.881

5.  Multimodal Brain Connectomics-Based Prediction of Parkinson's Disease Using Graph Attention Networks.

Authors:  Apoorva Safai; Nirvi Vakharia; Shweta Prasad; Jitender Saini; Apurva Shah; Abhishek Lenka; Pramod Kumar Pal; Madhura Ingalhalikar
Journal:  Front Neurosci       Date:  2022-02-23       Impact factor: 4.677

Review 6.  Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls.

Authors:  Mohammad R Arbabshirani; Sergey Plis; Jing Sui; Vince D Calhoun
Journal:  Neuroimage       Date:  2016-03-21       Impact factor: 6.556

7.  Towards a brain-based predictome of mental illness.

Authors:  Barnaly Rashid; Vince Calhoun
Journal:  Hum Brain Mapp       Date:  2020-05-06       Impact factor: 5.038

8.  Phenotypic clustering: a novel method for microglial morphology analysis.

Authors:  Franck Verdonk; Pascal Roux; Patricia Flamant; Laurence Fiette; Fernando A Bozza; Sébastien Simard; Marc Lemaire; Benoit Plaud; Spencer L Shorte; Tarek Sharshar; Fabrice Chrétien; Anne Danckaert
Journal:  J Neuroinflammation       Date:  2016-06-17       Impact factor: 8.322

  8 in total

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