Literature DB >> 23284520

Ethyl 2-[2-(4-hy-droxy-3-meth-oxy-benzyl-idene)hydrazin-1-yl-idene]-3,4-dimethyl-2,3-dihydro-1,3-thia-zole-5-carboxyl-ate.

Sema Oztürk Yildirim1, Ray J Butcher, Yavuz Köysal, Esen Nur Kantar, Ayşe Belder.   

Abstract

The title compound, C(16)H(19)N(3)O(4)S, is almost planar, with a dihedral angle of 2.88 (9)° between the mean planes of the benzene and thia-zole rings. The mol-ecule adopts an E conformation about the two C=N bonds, with a C-N-N-C torsion angle of -177.01 (11)°. An intra-molecular C-H⋯O hydrogen bond exists between a thia-zole methyl group and the formic acid ethyl ester carbonyl O atom. In the crystal, mol-ecules are linked by O--H⋯O hydrogen bonds, forming chains propagating along [2-10]. The chains are linked via C-H⋯O hydrogen bonds with R(2) (2)(12) ring motifs, forming sheets lying parallel to (12-2). The sheets are further linked through out-of-plane C-H⋯N hydrogen bonds with R(2) (2)(12) ring motifs and C-H⋯π inter-actions, forming an inter-esting three-dimensional supra-molecular architecture.

Entities:  

Year:  2012        PMID: 23284520      PMCID: PMC3515300          DOI: 10.1107/S1600536812043772

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the various biological activities of 1,3-thia­zoles, 1,3,4-thia­diazo­les and their derivatives, see: Shucla et al. (1984 ▶); Desai & Baxi (1992 ▶); Mullican et al. (1993 ▶); Chapleo et al. (1986 ▶); Turner et al. (1988 ▶); Mazzone et al. (1993 ▶); Miyamoto et al. (1985 ▶); Hanna et al. (1995 ▶); Oh et al. (2002 ▶). For the anti­microbial activity of thia­diazo­les and related compounds, see: Sancak et al. (2007 ▶). For bond lengths of structurally related mol­ecules, see: Imhof & Wunderle (2012 ▶); Randell et al. (2012 ▶). For details of the Cambridge Structural Database, see: Allen (2002 ▶). For synthetic details, see: Er et al. (2009 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H19N3O4S M = 349.40 Triclinic, a = 6.8957 (3) Å b = 10.2716 (5) Å c = 12.7297 (6) Å α = 74.843 (4)° β = 87.579 (4)° γ = 73.304 (4)° V = 833.06 (7) Å3 Z = 2 Cu Kα radiation μ = 1.96 mm−1 T = 123 K 0.40 × 0.35 × 0.30 mm

Data collection

Agilent Xcalibur (Ruby, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis RED; Agilent, 2011 ▶) T min = 0.508, T max = 0.591 5272 measured reflections 3316 independent reflections 3254 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.099 S = 1.02 3316 reflections 222 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812043772/su2516sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812043772/su2516Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812043772/su2516Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19N3O4SZ = 2
Mr = 349.40F(000) = 368
Triclinic, P1Dx = 1.393 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 6.8957 (3) ÅCell parameters from 4259 reflections
b = 10.2716 (5) Åθ = 3.6–75.0°
c = 12.7297 (6) ŵ = 1.96 mm1
α = 74.843 (4)°T = 123 K
β = 87.579 (4)°Block, yellow
γ = 73.304 (4)°0.40 × 0.35 × 0.30 mm
V = 833.06 (7) Å3
Agilent Xcalibur (Ruby, Gemini) diffractometer3316 independent reflections
Radiation source: Enhance (Cu) X-ray Source3254 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
Detector resolution: 10.5081 pixels mm-1θmax = 75.2°, θmin = 3.6°
ω scansh = −8→6
Absorption correction: multi-scan (CrysAlis RED; Agilent, 2011)k = −12→12
Tmin = 0.508, Tmax = 0.591l = −14→15
5272 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0628P)2 + 0.3221P] where P = (Fo2 + 2Fc2)/3
3316 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.70492 (5)0.40814 (3)0.24740 (3)0.02041 (12)
N10.66196 (18)0.27633 (12)0.10704 (9)0.0211 (3)
N20.36294 (18)0.44474 (12)0.12687 (9)0.0215 (2)
N30.28500 (18)0.54591 (12)0.18464 (9)0.0209 (2)
O11.09737 (14)0.30755 (10)0.35164 (8)0.0228 (2)
O21.25414 (15)0.14195 (11)0.26529 (9)0.0262 (2)
O30.01284 (15)0.91719 (11)0.41058 (8)0.0250 (2)
O4−0.36639 (15)1.02884 (11)0.35124 (9)0.0260 (2)
H4O−0.48611.06020.32580.031*
C10.5524 (2)0.38117 (14)0.15329 (11)0.0197 (3)
C20.8616 (2)0.21847 (14)0.14284 (11)0.0209 (3)
C30.9110 (2)0.27517 (14)0.21950 (11)0.0207 (3)
C41.1041 (2)0.23365 (14)0.27913 (11)0.0209 (3)
C51.2838 (2)0.27620 (15)0.41589 (11)0.0229 (3)
H5A1.39930.27940.36740.027*
H5B1.31310.18100.46640.027*
C61.2533 (2)0.38483 (16)0.47858 (12)0.0277 (3)
H6A1.37670.36710.52200.042*
H6B1.13990.37990.52700.042*
H6C1.22340.47860.42780.042*
C70.9959 (2)0.10729 (15)0.09540 (12)0.0256 (3)
H7A1.13270.07810.12830.038*
H7B1.00110.14490.01650.038*
H7C0.94210.02600.11020.038*
C80.5613 (2)0.23358 (15)0.02873 (12)0.0250 (3)
H8A0.43870.21140.06020.037*
H8B0.65320.15020.01130.037*
H8C0.52430.3105−0.03790.037*
C90.0948 (2)0.60606 (14)0.16368 (11)0.0211 (3)
H9A0.02750.57780.11380.025*
C10−0.0221 (2)0.71595 (14)0.21327 (11)0.0205 (3)
C110.0644 (2)0.76348 (14)0.28849 (11)0.0199 (3)
H11A0.20470.72470.30770.024*
C12−0.0528 (2)0.86614 (14)0.33475 (11)0.0206 (3)
C13−0.2607 (2)0.92734 (14)0.30389 (11)0.0208 (3)
C14−0.3465 (2)0.88063 (15)0.22958 (11)0.0228 (3)
H14A−0.48620.92070.20910.027*
C15−0.2279 (2)0.77488 (15)0.18495 (11)0.0231 (3)
H15A−0.28800.74260.13470.028*
C160.2148 (2)0.84763 (16)0.45449 (12)0.0271 (3)
H16A0.24240.88980.51080.041*
H16B0.31110.85800.39630.041*
H16C0.22900.74750.48640.041*
U11U22U33U12U13U23
S10.01519 (18)0.02052 (19)0.02471 (19)−0.00053 (13)−0.00105 (12)−0.00933 (13)
N10.0198 (6)0.0202 (6)0.0223 (5)−0.0022 (5)−0.0005 (4)−0.0073 (4)
N20.0189 (6)0.0207 (6)0.0236 (6)−0.0022 (4)−0.0011 (4)−0.0073 (4)
N30.0190 (6)0.0203 (6)0.0219 (5)−0.0023 (5)0.0000 (4)−0.0068 (4)
O10.0151 (5)0.0248 (5)0.0263 (5)−0.0009 (4)−0.0017 (4)−0.0079 (4)
O20.0169 (5)0.0255 (5)0.0330 (5)0.0010 (4)−0.0016 (4)−0.0095 (4)
O30.0170 (5)0.0275 (5)0.0296 (5)0.0007 (4)−0.0047 (4)−0.0131 (4)
O40.0167 (5)0.0278 (5)0.0314 (5)0.0023 (4)−0.0019 (4)−0.0135 (4)
C10.0195 (7)0.0189 (6)0.0201 (6)−0.0043 (5)0.0003 (5)−0.0052 (5)
C20.0188 (6)0.0182 (6)0.0226 (6)−0.0026 (5)0.0023 (5)−0.0030 (5)
C30.0160 (6)0.0184 (6)0.0247 (6)−0.0005 (5)0.0024 (5)−0.0053 (5)
C40.0167 (6)0.0191 (6)0.0239 (6)−0.0030 (5)0.0017 (5)−0.0027 (5)
C50.0150 (6)0.0254 (7)0.0250 (7)−0.0018 (5)−0.0026 (5)−0.0049 (5)
C60.0235 (7)0.0273 (7)0.0301 (7)−0.0027 (6)−0.0025 (6)−0.0080 (6)
C70.0248 (7)0.0225 (7)0.0268 (7)−0.0009 (6)0.0038 (6)−0.0087 (5)
C80.0240 (7)0.0251 (7)0.0264 (7)−0.0039 (6)−0.0019 (6)−0.0110 (6)
C90.0200 (7)0.0211 (6)0.0213 (6)−0.0048 (5)−0.0014 (5)−0.0049 (5)
C100.0181 (7)0.0196 (6)0.0210 (6)−0.0028 (5)0.0003 (5)−0.0033 (5)
C110.0143 (6)0.0200 (6)0.0219 (6)−0.0019 (5)−0.0008 (5)−0.0027 (5)
C120.0192 (7)0.0213 (6)0.0197 (6)−0.0049 (5)−0.0004 (5)−0.0037 (5)
C130.0176 (6)0.0201 (6)0.0215 (6)−0.0019 (5)0.0017 (5)−0.0041 (5)
C140.0146 (6)0.0251 (7)0.0255 (7)−0.0012 (5)−0.0022 (5)−0.0055 (5)
C150.0195 (7)0.0248 (7)0.0244 (7)−0.0038 (5)−0.0025 (5)−0.0075 (5)
C160.0189 (7)0.0310 (7)0.0303 (7)−0.0010 (6)−0.0062 (6)−0.0121 (6)
S1—C11.7507 (14)C6—H6B0.9800
S1—C31.7626 (14)C6—H6C0.9800
N1—C21.3773 (18)C7—H7A0.9800
N1—C11.3795 (18)C7—H7B0.9800
N1—C81.4599 (17)C7—H7C0.9800
N2—C11.2958 (18)C8—H8A0.9800
N2—N31.3982 (16)C8—H8B0.9800
N3—C91.2847 (18)C8—H8C0.9800
O1—C41.3315 (17)C9—C101.4592 (19)
O1—C51.4624 (16)C9—H9A0.9500
O2—C41.2247 (17)C10—C151.3951 (19)
O3—C121.3601 (17)C10—C111.4039 (19)
O3—C161.4307 (16)C11—C121.3808 (19)
O4—C131.3551 (17)C11—H11A0.9500
O4—H4O0.8400C12—C131.4159 (19)
C2—C31.359 (2)C13—C141.387 (2)
C2—C71.4941 (19)C14—C151.394 (2)
C3—C41.457 (2)C14—H14A0.9500
C5—C61.498 (2)C15—H15A0.9500
C5—H5A0.9900C16—H16A0.9800
C5—H5B0.9900C16—H16B0.9800
C6—H6A0.9800C16—H16C0.9800
C1—S1—C389.88 (6)C2—C7—H7C109.5
C2—N1—C1114.90 (11)H7A—C7—H7C109.5
C2—N1—C8125.69 (12)H7B—C7—H7C109.5
C1—N1—C8119.40 (11)N1—C8—H8A109.5
C1—N2—N3110.82 (11)N1—C8—H8B109.5
C9—N3—N2112.08 (11)H8A—C8—H8B109.5
C4—O1—C5116.48 (11)N1—C8—H8C109.5
C12—O3—C16116.76 (11)H8A—C8—H8C109.5
C13—O4—H4O109.5H8B—C8—H8C109.5
N2—C1—N1121.36 (12)N3—C9—C10122.79 (13)
N2—C1—S1128.22 (11)N3—C9—H9A118.6
N1—C1—S1110.42 (10)C10—C9—H9A118.6
C3—C2—N1112.65 (12)C15—C10—C11119.09 (13)
C3—C2—C7127.97 (13)C15—C10—C9118.38 (12)
N1—C2—C7119.37 (12)C11—C10—C9122.53 (12)
C2—C3—C4127.31 (12)C12—C11—C10120.55 (12)
C2—C3—S1112.14 (10)C12—C11—H11A119.7
C4—C3—S1120.50 (11)C10—C11—H11A119.7
O2—C4—O1123.89 (13)O3—C12—C11125.70 (13)
O2—C4—C3124.66 (13)O3—C12—C13114.35 (12)
O1—C4—C3111.45 (11)C11—C12—C13119.95 (13)
O1—C5—C6107.59 (11)O4—C13—C14123.43 (13)
O1—C5—H5A110.2O4—C13—C12116.96 (12)
C6—C5—H5A110.2C14—C13—C12119.61 (13)
O1—C5—H5B110.2C13—C14—C15120.03 (13)
C6—C5—H5B110.2C13—C14—H14A120.0
H5A—C5—H5B108.5C15—C14—H14A120.0
C5—C6—H6A109.5C14—C15—C10120.74 (13)
C5—C6—H6B109.5C14—C15—H15A119.6
H6A—C6—H6B109.5C10—C15—H15A119.6
C5—C6—H6C109.5O3—C16—H16A109.5
H6A—C6—H6C109.5O3—C16—H16B109.5
H6B—C6—H6C109.5H16A—C16—H16B109.5
C2—C7—H7A109.5O3—C16—H16C109.5
C2—C7—H7B109.5H16A—C16—H16C109.5
H7A—C7—H7B109.5H16B—C16—H16C109.5
C1—N2—N3—C9−177.01 (11)S1—C3—C4—O2179.55 (11)
N3—N2—C1—N1179.73 (11)C2—C3—C4—O1−177.28 (13)
N3—N2—C1—S10.40 (17)S1—C3—C4—O1−0.06 (16)
C2—N1—C1—N2179.91 (12)C4—O1—C5—C6171.31 (11)
C8—N1—C1—N2−1.54 (19)N2—N3—C9—C10−179.74 (11)
C2—N1—C1—S1−0.65 (15)N3—C9—C10—C15179.88 (13)
C8—N1—C1—S1177.90 (10)N3—C9—C10—C11−0.5 (2)
C3—S1—C1—N2179.35 (13)C15—C10—C11—C120.6 (2)
C3—S1—C1—N1−0.04 (10)C9—C10—C11—C12−178.93 (12)
C1—N1—C2—C31.22 (17)C16—O3—C12—C11−7.2 (2)
C8—N1—C2—C3−177.22 (12)C16—O3—C12—C13172.68 (12)
C1—N1—C2—C7−178.01 (11)C10—C11—C12—O3177.97 (12)
C8—N1—C2—C73.6 (2)C10—C11—C12—C13−1.9 (2)
N1—C2—C3—C4176.20 (13)O3—C12—C13—O41.00 (18)
C7—C2—C3—C4−4.7 (2)C11—C12—C13—O4−179.11 (12)
N1—C2—C3—S1−1.21 (15)O3—C12—C13—C14−178.01 (12)
C7—C2—C3—S1177.93 (11)C11—C12—C13—C141.9 (2)
C1—S1—C3—C20.71 (11)O4—C13—C14—C15−179.53 (13)
C1—S1—C3—C4−176.90 (11)C12—C13—C14—C15−0.6 (2)
C5—O1—C4—O21.04 (19)C13—C14—C15—C10−0.7 (2)
C5—O1—C4—C3−179.34 (11)C11—C10—C15—C140.7 (2)
C2—C3—C4—O22.3 (2)C9—C10—C15—C14−179.74 (12)
D—H···AD—HH···AD···AD—H···A
C7—H7A···O20.982.283.0111 (19)130
O4—H4O···O2i0.841.852.6878 (14)176
C16—H16A···O4ii0.982.413.3824 (18)171
C8—H8C···N3iii0.982.623.3986 (19)137
C6—H6B···Cg1iv0.982.963.6414 (16)128
C7—H7C···Cg1v0.982.623.4762 (16)146
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C10–C15 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C7—H7A⋯O20.982.283.0111 (19)130
O4—H4O⋯O2i 0.841.852.6878 (14)176
C16—H16A⋯O4ii 0.982.413.3824 (18)171
C8—H8C⋯N3iii 0.982.623.3986 (19)137
C6—H6BCg1iv 0.982.963.6414 (16)128
C7—H7CCg1v 0.982.623.4762 (16)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  11 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Antitumor activity of 5-substituted 2-acylamino-1,3,4-thiadiazoles against transplantable rodent tumors.

Authors:  K Miyamoto; R Koshiura; M Mori; H Yokoi; C Mori; T Hasegawa; K Takatori
Journal:  Chem Pharm Bull (Tokyo)       Date:  1985-11       Impact factor: 1.645

4.  Substituted 1,3,4-thiadiazoles with anticonvulsant activity. 1. Hydrazines.

Authors:  C B Chapleo; M Myers; P L Myers; J F Saville; A C Smith; M R Stillings; I F Tulloch; D S Walter; A P Welbourn
Journal:  J Med Chem       Date:  1986-11       Impact factor: 7.446

5.  Design of 5-(3,5-di-tert-butyl-4-hydroxyphenyl)-1,3,4-thiadiazoles, -1,3,4-oxadiazoles, and -1,2,4-triazoles as orally-active, nonulcerogenic antiinflammatory agents.

Authors:  M D Mullican; M W Wilson; D T Connor; C R Kostlan; D J Schrier; R D Dyer
Journal:  J Med Chem       Date:  1993-04-16       Impact factor: 7.446

6.  Synthesis and local anesthetic activity of alkylaminoacyl derivatives of 2-amino-1,3,4-thiadiazole.

Authors:  G Mazzone; R Pignatello; S Mazzone; A Panico; G Pennisi; R Castana; P Mazzone
Journal:  Farmaco       Date:  1993-09

7.  Synthesis and antibacterial activity of 1beta-methyl-2-(5-substituted thiazolo pyrrolidin-3-ylthio)carbapenem derivatives.

Authors:  Chang-Hyun Oh; Han-Won Cho; Daejin Baek; Jung-Hyuck Cho
Journal:  Eur J Med Chem       Date:  2002-09       Impact factor: 6.514

8.  Synthesis and pharmacological evaluation of some novel 5-(pyrazol-3-yl)thiadiazole and oxadiazole derivatives as potential hypoglycemic agents.

Authors:  M A Hanna; M M Girges; D Rasala; R Gawinecki
Journal:  Arzneimittelforschung       Date:  1995-10

9.  (1E,2E)-1,2-Bis(2,3-dihydro-1H-inden-1-yl-idene)hydrazine.

Authors:  Wolfgang Imhof; Joachim Wunderle
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

10.  6,6'-Dimeth-oxy-2,2'-{[(E,E)-hydrazine-1,2-diyl-idene]bis-(methanylyl-idene)}diphenol methanol disolvate.

Authors:  Nicholas M Randell; Laurence K Thompson; Louise N Dawe
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-15
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