Literature DB >> 23267108

Electronic structure of the unique [4Fe-3S] cluster in O2-tolerant hydrogenases characterized by 57Fe Mossbauer and EPR spectroscopy.

Maria-Eirini Pandelia1, Dmytro Bykov, Robert Izsak, Pascale Infossi, Marie-Thérèse Giudici-Orticoni, Eckhard Bill, Frank Neese, Wolfgang Lubitz.   

Abstract

Iron-sulfur clusters are ubiquitous electron transfer cofactors in hydrogenases. Their types and redox properties are important for H(2) catalysis, but, recently, their role in a protection mechanism against oxidative inactivation has also been recognized for a [4Fe-3S] cluster in O(2)-tolerant group 1 [NiFe] hydrogenases. This cluster, which is uniquely coordinated by six cysteines, is situated in the proximity of the catalytic [NiFe] site and exhibits unusual redox versatility. The [4Fe-3S] cluster in hydrogenase (Hase) I from Aquifex aeolicus performs two redox transitions within a very small potential range, forming a superoxidized state above +200 mV vs. standard hydrogen electrode (SHE). Crystallographic data has revealed that this state is stabilized by the coordination of one of the iron atoms to a backbone nitrogen. Thus, the proximal [4Fe-3S] cluster undergoes redox-dependent changes to serve multiple purposes beyond classical electron transfer. In this paper, we present field-dependent (57)Fe-Mössbauer and EPR data for Hase I, which, in conjunction with spectroscopically calibrated density functional theory (DFT) calculations, reveal the distribution of Fe valences and spin-coupling schemes for the iron-sulfur clusters. The data demonstrate that the electronic structure of the [4Fe-3S] core in its three oxidation states closely resembles that of corresponding conventional [4Fe-4S] cubanes, albeit with distinct differences for some individual iron sites. The medial and distal iron-sulfur clusters have similar electronic properties as the corresponding cofactors in standard hydrogenases, although their redox potentials are higher.

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Year:  2012        PMID: 23267108      PMCID: PMC3545817          DOI: 10.1073/pnas.1202575110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Study of the spin-spin interactions between the metal centers of Desulfovibrio gigas aldehyde oxidoreductase: identification of the reducible sites of the [2Fe-2S]1+,2+ clusters.

Authors:  Claude More; Marcel Asso; Guy Roger; Bruno Guigliarelli; Jorge Caldeira; José Moura; Patrick Bertrand
Journal:  Biochemistry       Date:  2005-08-30       Impact factor: 3.162

Review 2.  Mixed valent sites in biological electron transfer.

Authors:  Edward I Solomon; Xiangjin Xie; Abhishek Dey
Journal:  Chem Soc Rev       Date:  2008-02-11       Impact factor: 54.564

3.  Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold.

Authors:  W Huang; J Jia; J Cummings; M Nelson; G Schneider; Y Lindqvist
Journal:  Structure       Date:  1997-05-15       Impact factor: 5.006

4.  Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas.

Authors:  A Volbeda; M H Charon; C Piras; E C Hatchikian; M Frey; J C Fontecilla-Camps
Journal:  Nature       Date:  1995-02-16       Impact factor: 49.962

Review 5.  Iron-sulfur clusters: nature's modular, multipurpose structures.

Authors:  H Beinert; R H Holm; E Münck
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

6.  The CCG-domain-containing subunit SdhE of succinate:quinone oxidoreductase from Sulfolobus solfataricus P2 binds a [4Fe-4S] cluster.

Authors:  Nils Hamann; Eckhard Bill; Jacob E Shokes; Robert A Scott; Marina Bennati; Reiner Hedderich
Journal:  J Biol Inorg Chem       Date:  2008-12-16       Impact factor: 3.358

7.  Role of histidine-86 in the catalytic mechanism of ferredoxin:thioredoxin reductase.

Authors:  Elizabeth M Walters; Ricardo Garcia-Serres; Sunil G Naik; Florence Bourquin; Dominique A Glauser; Peter Schürmann; Boi Hanh Huynh; Michael K Johnson
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

8.  Reversible super-reduction of the cubane [4Fe-4S](3+;2+;1+) in the high-potential iron-sulfur protein under non-denaturing conditions. EPR spectroscopic and electrochemical studies.

Authors:  H A Heering; Y B Bulsink; W R Hagen; T E Meyer
Journal:  Eur J Biochem       Date:  1995-09-15

9.  Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin.

Authors:  Abhishek Dey; Francis E Jenney; Michael W W Adams; Elena Babini; Yasuhiro Takahashi; Keiichi Fukuyama; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

10.  Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.

Authors:  Leonid A Sazanov; Philip Hinchliffe
Journal:  Science       Date:  2006-02-09       Impact factor: 47.728

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  15 in total

1.  Electronic states of the O2-tolerant [NiFe] hydrogenase proximal cluster.

Authors:  Jean-Marie Mouesca; Patricia Amara; Juan C Fontecilla-Camps
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-28       Impact factor: 11.205

2.  Reply to Mouesca et al.: Electronic structure of the proximal [4Fe-3S] cluster of O2-tolerant [NiFe] hydrogenases.

Authors:  Maria-Eirini Pandelia; Dmytro Bykov; Robert Izsak; Pascale Infossi; Marie-Thérèse Giudici-Orticoni; Eckhard Bill; Frank Neese; Wolfgang Lubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

3.  Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site.

Authors:  Geoffrey M Chambers; Mioy T Huynh; Yulong Li; Sharon Hammes-Schiffer; Thomas B Rauchfuss; Edward Reijerse; Wolfgang Lubitz
Journal:  Inorg Chem       Date:  2015-09-30       Impact factor: 5.165

4.  Mechanism of O2 diffusion and reduction in FeFe hydrogenases.

Authors:  Adam Kubas; Christophe Orain; David De Sancho; Laure Saujet; Matteo Sensi; Charles Gauquelin; Isabelle Meynial-Salles; Philippe Soucaille; Hervé Bottin; Carole Baffert; Vincent Fourmond; Robert B Best; Jochen Blumberger; Christophe Léger
Journal:  Nat Chem       Date:  2016-08-22       Impact factor: 24.427

Review 5.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

6.  Unanticipated coordination of tris buffer to the Radical SAM cluster of the RimO methylthiotransferase.

Authors:  Thibaut Molle; Martin Clémancey; Jean-Marc Latour; Velavan Kathirvelu; Giuseppe Sicoli; Farhad Forouhar; Etienne Mulliez; Serge Gambarelli; Mohamed Atta
Journal:  J Biol Inorg Chem       Date:  2016-06-03       Impact factor: 3.358

7.  Advanced electron paramagnetic resonance on the catalytic iron-sulfur cluster bound to the CCG domain of heterodisulfide reductase and succinate: quinone reductase.

Authors:  Alistair J Fielding; Kristian Parey; Ulrich Ermler; Silvan Scheller; Bernhard Jaun; Marina Bennati
Journal:  J Biol Inorg Chem       Date:  2013-09-14       Impact factor: 3.358

8.  Reversible [4Fe-3S] cluster morphing in an O(2)-tolerant [NiFe] hydrogenase.

Authors:  Stefan Frielingsdorf; Johannes Fritsch; Andrea Schmidt; Mathias Hammer; Julia Löwenstein; Elisabeth Siebert; Vladimir Pelmenschikov; Tina Jaenicke; Jacqueline Kalms; Yvonne Rippers; Friedhelm Lendzian; Ingo Zebger; Christian Teutloff; Martin Kaupp; Robert Bittl; Peter Hildebrandt; Bärbel Friedrich; Oliver Lenz; Patrick Scheerer
Journal:  Nat Chem Biol       Date:  2014-04-06       Impact factor: 15.040

9.  Nitrosylation of Nitric-Oxide-Sensing Regulatory Proteins Containing [4Fe-4S] Clusters Gives Rise to Multiple Iron-Nitrosyl Complexes.

Authors:  Pauline N Serrano; Hongxin Wang; Jason C Crack; Christopher Prior; Matthew I Hutchings; Andrew J Thomson; Saeed Kamali; Yoshitaka Yoda; Jiyong Zhao; Michael Y Hu; Ercan E Alp; Vasily S Oganesyan; Nick E Le Brun; Stephen P Cramer
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-25       Impact factor: 15.336

10.  The Mössbauer Parameters of the Proximal Cluster of Membrane-Bound Hydrogenase Revisited: A Density Functional Theory Study.

Authors:  Shadan Ghassemi Tabrizi; Vladimir Pelmenschikov; Louis Noodleman; Martin Kaupp
Journal:  J Chem Theory Comput       Date:  2015-12-16       Impact factor: 6.006

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