Literature DB >> 24705592

Reversible [4Fe-3S] cluster morphing in an O(2)-tolerant [NiFe] hydrogenase.

Stefan Frielingsdorf1, Johannes Fritsch2, Andrea Schmidt3, Mathias Hammer3, Julia Löwenstein4, Elisabeth Siebert5, Vladimir Pelmenschikov6, Tina Jaenicke2, Jacqueline Kalms3, Yvonne Rippers5, Friedhelm Lendzian5, Ingo Zebger5, Christian Teutloff4, Martin Kaupp6, Robert Bittl4, Peter Hildebrandt5, Bärbel Friedrich2, Oliver Lenz1, Patrick Scheerer3.   

Abstract

Hydrogenases catalyze the reversible oxidation of H(2) into protons and electrons and are usually readily inactivated by O(2). However, a subgroup of the [NiFe] hydrogenases, including the membrane-bound [NiFe] hydrogenase from Ralstonia eutropha, has evolved remarkable tolerance toward O(2) that enables their host organisms to utilize H(2) as an energy source at high O(2). This feature is crucially based on a unique six cysteine-coordinated [4Fe-3S] cluster located close to the catalytic center, whose properties were investigated in this study using a multidisciplinary approach. The [4Fe-3S] cluster undergoes redox-dependent reversible transformations, namely iron swapping between a sulfide and a peptide amide N. Moreover, our investigations unraveled the redox-dependent and reversible occurence of an oxygen ligand located at a different iron. This ligand is hydrogen bonded to a conserved histidine that is essential for H(2) oxidation at high O(2). We propose that these transformations, reminiscent of those of the P-cluster of nitrogenase, enable the consecutive transfer of two electrons within a physiological potential range.

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Year:  2014        PMID: 24705592     DOI: 10.1038/nchembio.1500

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  47 in total

1.  A trimeric supercomplex of the oxygen-tolerant membrane-bound [NiFe]-hydrogenase from Ralstonia eutropha H16.

Authors:  Stefan Frielingsdorf; Torsten Schubert; Anne Pohlmann; Oliver Lenz; Bärbel Friedrich
Journal:  Biochemistry       Date:  2011-11-29       Impact factor: 3.162

2.  Understanding and tuning the catalytic bias of hydrogenase.

Authors:  Abbas Abou Hamdan; Sébastien Dementin; Pierre-Pol Liebgott; Oscar Gutierrez-Sanz; Pierre Richaud; Antonio L De Lacey; Marc Rousset; Patrick Bertrand; Laurent Cournac; Christophe Léger
Journal:  J Am Chem Soc       Date:  2012-05-08       Impact factor: 15.419

3.  Chaperones specific for the membrane-bound [NiFe]-hydrogenase interact with the Tat signal peptide of the small subunit precursor in Ralstonia eutropha H16.

Authors:  Torsten Schubert; Oliver Lenz; Eberhard Krause; Rudolf Volkmer; Bärbel Friedrich
Journal:  Mol Microbiol       Date:  2007-09-10       Impact factor: 3.501

4.  The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state).

Authors:  Hideaki Ogata; Petra Kellers; Wolfgang Lubitz
Journal:  J Mol Biol       Date:  2010-07-29       Impact factor: 5.469

5.  Resonance Raman spectroscopy as a tool to monitor the active site of hydrogenases.

Authors:  Elisabeth Siebert; Marius Horch; Yvonne Rippers; Johannes Fritsch; Stefan Frielingsdorf; Oliver Lenz; Francisco Velazquez Escobar; Friedrich Siebert; Lars Paasche; Uwe Kuhlmann; Friedhelm Lendzian; Maria-Andrea Mroginski; Ingo Zebger; Peter Hildebrandt
Journal:  Angew Chem Int Ed Engl       Date:  2013-04-22       Impact factor: 15.336

6.  Crystal structure of nitrile hydratase reveals a novel iron centre in a novel fold.

Authors:  W Huang; J Jia; J Cummings; M Nelson; G Schneider; Y Lindqvist
Journal:  Structure       Date:  1997-05-15       Impact factor: 5.006

7.  Oxygen-tolerant H2 oxidation by membrane-bound [NiFe] hydrogenases of ralstonia species. Coping with low level H2 in air.

Authors:  Marcus Ludwig; James A Cracknell; Kylie A Vincent; Fraser A Armstrong; Oliver Lenz
Journal:  J Biol Chem       Date:  2008-11-06       Impact factor: 5.157

8.  Redox-dependent structural transformations of the [4Fe-3S] proximal cluster in O2-tolerant membrane-bound [NiFe]-hydrogenase: a DFT study.

Authors:  Vladimir Pelmenschikov; Martin Kaupp
Journal:  J Am Chem Soc       Date:  2013-08-05       Impact factor: 15.419

Review 9.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  19 in total

1.  Modeling three-dimensional structure of two closely related Ni-Fe hydrogenases.

Authors:  A V Abdullatypov; A A Tsygankov
Journal:  Photosynth Res       Date:  2015-01-09       Impact factor: 3.573

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

3.  Infrared Spectroscopy During Electrocatalytic Turnover Reveals the Ni-L Active Site State During H2 Oxidation by a NiFe Hydrogenase.

Authors:  Ricardo Hidalgo; Philip A Ash; Adam J Healy; Kylie A Vincent
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-29       Impact factor: 15.336

4.  Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment.

Authors:  Jillian M Couto; Umer Zeeshan Ijaz; Vernon R Phoenix; Melanie Schirmer; William T Sloan
Journal:  Curr Microbiol       Date:  2015-06-05       Impact factor: 2.188

Review 5.  Electrochemical insights into the mechanism of NiFe membrane-bound hydrogenases.

Authors:  Lindsey A Flanagan; Alison Parkin
Journal:  Biochem Soc Trans       Date:  2016-02       Impact factor: 5.407

6.  Retuning the Catalytic Bias and Overpotential of a [NiFe]-Hydrogenase via a Single Amino Acid Exchange at the Electron Entry/Exit Site.

Authors:  Hope Adamson; Martin Robinson; John J Wright; Lindsey A Flanagan; Julia Walton; Darrell Elton; David J Gavaghan; Alan M Bond; Maxie M Roessler; Alison Parkin
Journal:  J Am Chem Soc       Date:  2017-07-26       Impact factor: 15.419

7.  What is the trigger mechanism for the reversal of electron flow in oxygen-tolerant [NiFe] hydrogenases?

Authors:  Ian Dance
Journal:  Chem Sci       Date:  2014-12-08       Impact factor: 9.825

8.  Hydroxy-bridged resting states of a [NiFe]-hydrogenase unraveled by cryogenic vibrational spectroscopy and DFT computations.

Authors:  Giorgio Caserta; Vladimir Pelmenschikov; Christian Lorent; Armel F Tadjoung Waffo; Sagie Katz; Lars Lauterbach; Janna Schoknecht; Hongxin Wang; Yoshitaka Yoda; Kenji Tamasaku; Martin Kaupp; Peter Hildebrandt; Oliver Lenz; Stephen P Cramer; Ingo Zebger
Journal:  Chem Sci       Date:  2020-12-11       Impact factor: 9.825

9.  Exploring the directionality of Escherichia coli formate hydrogenlyase: a membrane-bound enzyme capable of fixing carbon dioxide to organic acid.

Authors:  Constanze Pinske; Frank Sargent
Journal:  Microbiologyopen       Date:  2016-05-02       Impact factor: 3.139

10.  The Mössbauer Parameters of the Proximal Cluster of Membrane-Bound Hydrogenase Revisited: A Density Functional Theory Study.

Authors:  Shadan Ghassemi Tabrizi; Vladimir Pelmenschikov; Louis Noodleman; Martin Kaupp
Journal:  J Chem Theory Comput       Date:  2015-12-16       Impact factor: 6.006

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