Literature DB >> 27259294

Unanticipated coordination of tris buffer to the Radical SAM cluster of the RimO methylthiotransferase.

Thibaut Molle1, Martin Clémancey2, Jean-Marc Latour2, Velavan Kathirvelu3,4, Giuseppe Sicoli3,4, Farhad Forouhar5, Etienne Mulliez6, Serge Gambarelli7,8, Mohamed Atta9.   

Abstract

Radical SAM enzymes generally contain a [4Fe-4S](2+/1+) (RS cluster) cluster bound to the protein via the three cysteines of a canonical motif CxxxCxxC. The non-cysteinyl iron is used to coordinate SAM via its amino-carboxylate moiety. The coordination-induced proximity between the cluster acting as an electron donor and the adenosyl-sulfonium bond of SAM allows for the homolytic cleavage of the latter leading to the formation of the reactive 5'-deoxyadenosyl radical used for substrate activation. Most of the structures of Radical SAM enzymes have been obtained in the presence of SAM, and therefore, little is known about the situation when SAM is not present. In this report, we show that RimO, a methylthiotransferase belonging to the radical SAM superfamily, binds a Tris molecule in the absence of SAM leading to specific spectroscopic signatures both in Mössbauer and pulsed EPR spectroscopies. These data provide a cautionary note for researchers who work with coordinative unsaturated iron sulfur clusters.

Entities:  

Keywords:  Biosynthesis; Cofactor; Electron paramagnetic resonance; Iron–sulfur cluster; Ligand binding; Mössbauer spectroscopy; Pulsed EPR

Mesh:

Substances:

Year:  2016        PMID: 27259294     DOI: 10.1007/s00775-016-1365-8

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  25 in total

1.  Identification of an intermediate methyl carrier in the radical S-adenosylmethionine methylthiotransferases RimO and MiaB.

Authors:  Bradley J Landgraf; Arthur J Arcinas; Kyung-Hoon Lee; Squire J Booker
Journal:  J Am Chem Soc       Date:  2013-10-03       Impact factor: 15.419

2.  Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.

Authors:  Farhad Forouhar; Simon Arragain; Mohamed Atta; Serge Gambarelli; Jean-Marie Mouesca; Munif Hussain; Rong Xiao; Sylvie Kieffer-Jaquinod; Jayaraman Seetharaman; Thomas B Acton; Gaetano T Montelione; Etienne Mulliez; John F Hunt; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2013-03-31       Impact factor: 15.040

3.  Rapid colorimetric micromethod for the quantitation of complexed iron in biological samples.

Authors:  W W Fish
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

Review 4.  Iron-sulfur clusters: nature's modular, multipurpose structures.

Authors:  H Beinert; R H Holm; E Münck
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

5.  MiaB, a bifunctional radical-S-adenosylmethionine enzyme involved in the thiolation and methylation of tRNA, contains two essential [4Fe-4S] clusters.

Authors:  Heather L Hernández; Fabien Pierrel; Eric Elleingand; Ricardo García-Serres; Boi Hanh Huynh; Michael K Johnson; Marc Fontecave; Mohamed Atta
Journal:  Biochemistry       Date:  2007-04-04       Impact factor: 3.162

6.  Spectroscopic characterization of site-specific [Fe(4)S(4)] cluster chemistry in ferredoxin:thioredoxin reductase: implications for the catalytic mechanism.

Authors:  Elizabeth M Walters; Ricardo Garcia-Serres; Guy N L Jameson; Dominique A Glauser; Florence Bourquin; Wanda Manieri; Peter Schürmann; Michael K Johnson; Boi Hanh Huynh
Journal:  J Am Chem Soc       Date:  2005-07-06       Impact factor: 15.419

7.  Super-resolution biomolecular crystallography with low-resolution data.

Authors:  Gunnar F Schröder; Michael Levitt; Axel T Brunger
Journal:  Nature       Date:  2010-04-07       Impact factor: 49.962

8.  Semi-micro methods for analysis of labile sulfide and of labile sulfide plus sulfane sulfur in unusually stable iron-sulfur proteins.

Authors:  H Beinert
Journal:  Anal Biochem       Date:  1983-06       Impact factor: 3.365

9.  Isoprenoid biosynthesis via the MEP pathway: in vivo Mössbauer spectroscopy identifies a [4Fe-4S]2+ center with unusual coordination sphere in the LytB protein.

Authors:  Myriam Seemann; Karnjapan Janthawornpong; Julia Schweizer; Lars H Böttger; Adam Janoschka; Anne Ahrens-Botzong; Erasmienne Ngouamegne Tambou; Olaf Rotthaus; Alfred X Trautwein; Michel Rohmer
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

10.  RimO, a MiaB-like enzyme, methylthiolates the universally conserved Asp88 residue of ribosomal protein S12 in Escherichia coli.

Authors:  Brian P Anton; Lana Saleh; Jack S Benner; Elisabeth A Raleigh; Simon Kasif; Richard J Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-05       Impact factor: 11.205

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  3 in total

1.  First Step in Catalysis of the Radical S-Adenosylmethionine Methylthiotransferase MiaB Yields an Intermediate with a [3Fe-4S]0-Like Auxiliary Cluster.

Authors:  Bo Zhang; Arthur J Arcinas; Matthew I Radle; Alexey Silakov; Squire J Booker; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2020-01-16       Impact factor: 15.419

2.  Transformations of the FeS Clusters of the Methylthiotransferases MiaB and RimO, Detected by Direct Electrochemistry.

Authors:  Stephanie J Maiocco; Arthur J Arcinas; Bradley J Landgraf; Kyung-Hoon Lee; Squire J Booker; Sean J Elliott
Journal:  Biochemistry       Date:  2016-09-22       Impact factor: 3.162

3.  A trade-off for covalent and intercalation binding modes: a case study for Copper (II) ions and singly modified DNA nucleoside.

Authors:  Jean-Marie Mouesca; Hania Ahouari; Sarath Chandra Dantu; Giuseppe Sicoli
Journal:  Sci Rep       Date:  2019-08-29       Impact factor: 4.379

  3 in total

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