Literature DB >> 23260058

Effects of familial mutations on the monomer structure of Aβ₄₂.

Yu-Shan Lin, Vijay S Pande.   

Abstract

Amyloid beta (Aβ) peptide plays an important role in Alzheimer's disease. A number of mutations in the Aβ sequence lead to familial Alzheimer's disease, congophilic amyloid angiopathy, or hereditary cerebral hemorrhage with amyloid. Using molecular dynamics simulations of ∼200 μs for each system, we characterize and contrast the consequences of four pathogenic mutations (Italian, Dutch, Arctic, and Iowa) for the structural ensemble of the Aβ monomer. The four familial mutations are found to have distinct consequences for the monomer structure.
Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23260058      PMCID: PMC3525840          DOI: 10.1016/j.bpj.2012.11.009

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

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Authors:  Yu-Shan Lin; Gregory R Bowman; Kyle A Beauchamp; Vijay S Pande
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3.  The Alzheimer's peptides Abeta40 and 42 adopt distinct conformations in water: a combined MD / NMR study.

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4.  Characterizing the structural behavior of selected Aβ-42 monomers with different solubilities.

Authors:  Camilo Velez-Vega; Fernando A Escobedo
Journal:  J Phys Chem B       Date:  2011-04-12       Impact factor: 2.991

Review 5.  Everything you wanted to know about Markov State Models but were afraid to ask.

Authors:  Vijay S Pande; Kyle Beauchamp; Gregory R Bowman
Journal:  Methods       Date:  2010-06-04       Impact factor: 3.608

6.  Probing the origins of increased activity of the E22Q "Dutch" mutant Alzheimer's beta-amyloid peptide.

Authors:  F Massi; J E Straub
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

7.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
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8.  Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease.

Authors:  Summer L Bernstein; Nicholas F Dupuis; Noel D Lazo; Thomas Wyttenbach; Margaret M Condron; Gal Bitan; David B Teplow; Joan-Emma Shea; Brandon T Ruotolo; Carol V Robinson; Michael T Bowers
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9.  Structures and free-energy landscapes of the wild type and mutants of the Abeta(21-30) peptide are determined by an interplay between intrapeptide electrostatic and hydrophobic interactions.

Authors:  Bogdan Tarus; John E Straub; D Thirumalai
Journal:  J Mol Biol       Date:  2008-05-14       Impact factor: 5.469

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Authors:  Jana Khandogin; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-17       Impact factor: 11.205

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  15 in total

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3.  Dominance of misfolded intermediates in the dynamics of α-helix folding.

Authors:  Milo M Lin; Dmitry Shorokhov; Ahmed H Zewail
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4.  Highly Disordered Amyloid-β Monomer Probed by Single-Molecule FRET and MD Simulation.

Authors:  Fanjie Meng; Mathias M J Bellaiche; Jae-Yeol Kim; Gül H Zerze; Robert B Best; Hoi Sung Chung
Journal:  Biophys J       Date:  2018-02-27       Impact factor: 4.033

5.  Effect of a Paramagnetic Spin Label on the Intrinsically Disordered Peptide Ensemble of Amyloid-β.

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6.  Comparison of force fields for Alzheimer's A β42: A case study for intrinsically disordered proteins.

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7.  Effect of the English familial disease mutation (H6R) on the monomers and dimers of Aβ40 and Aβ42.

Authors:  Man Hoang Viet; Phuong H Nguyen; Philippe Derreumaux; Mai Suan Li
Journal:  ACS Chem Neurosci       Date:  2014-06-30       Impact factor: 4.418

Review 8.  The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.

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Journal:  Chem Soc Rev       Date:  2014-04-23       Impact factor: 54.564

9.  Pulsed Hydrogen-Deuterium Exchange Reveals Altered Structures and Mechanisms in the Aggregation of Familial Alzheimer's Disease Mutants.

Authors:  Eva Illes-Toth; Georg Meisl; Don L Rempel; Tuomas P J Knowles; Michael L Gross
Journal:  ACS Chem Neurosci       Date:  2021-05-14       Impact factor: 5.780

10.  The inverted free energy landscape of an intrinsically disordered peptide by simulations and experiments.

Authors:  Daniele Granata; Fahimeh Baftizadeh; Johnny Habchi; Celine Galvagnion; Alfonso De Simone; Carlo Camilloni; Alessandro Laio; Michele Vendruscolo
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