Literature DB >> 23249187

Structural analysis of protein-protein interactions in type I polyketide synthases.

Wei Xu1, Kangjian Qiao, Yi Tang.   

Abstract

Polyketide synthases (PKSs) are responsible for synthesizing a myriad of natural products with agricultural, medicinal relevance. The PKSs consist of multiple functional domains of which each can catalyze a specified chemical reaction leading to the synthesis of polyketides. Biochemical studies showed that protein-substrate and protein-protein interactions play crucial roles in these complex regio-/stereo-selective biochemical processes. Recent developments on X-ray crystallography and protein NMR techniques have allowed us to understand the biosynthetic mechanism of these enzymes from their structures. These structural studies have facilitated the elucidation of the sequence-function relationship of PKSs and will ultimately contribute to the prediction of product structure. This review will focus on the current knowledge of type I PKS structures and the protein-protein interactions in this system.

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Year:  2012        PMID: 23249187      PMCID: PMC3844684          DOI: 10.3109/10409238.2012.745476

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  162 in total

1.  Solution structure and backbone dynamics of the holo form of the frenolicin acyl carrier protein.

Authors:  Qing Li; Chaitan Khosla; Joseph D Puglisi; Corey W Liu
Journal:  Biochemistry       Date:  2003-04-29       Impact factor: 3.162

2.  Engineering of an active animal fatty acid synthase dimer with only one competent subunit.

Authors:  Anil K Joshi; Vangipuram S Rangan; Andrzej Witkowski; Stuart Smith
Journal:  Chem Biol       Date:  2003-02

Review 3.  Structural and functional organization of the animal fatty acid synthase.

Authors:  Stuart Smith; Andrzej Witkowski; Anil K Joshi
Journal:  Prog Lipid Res       Date:  2003-07       Impact factor: 16.195

4.  One-pot chemo-enzymatic synthesis of reporter-modified proteins.

Authors:  Andrew S Worthington; Michael D Burkart
Journal:  Org Biomol Chem       Date:  2005-11-24       Impact factor: 3.876

5.  Extender unit and acyl carrier protein specificity of ketosynthase domains of the 6-deoxyerythronolide B synthase.

Authors:  Alice Y Chen; Nathan A Schnarr; Chu-Young Kim; David E Cane; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2006-03-08       Impact factor: 15.419

Review 6.  Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms.

Authors:  Ben Shen
Journal:  Curr Opin Chem Biol       Date:  2003-04       Impact factor: 8.822

7.  Type I polyketide synthase requiring a discrete acyltransferase for polyketide biosynthesis.

Authors:  Yi-Qiang Cheng; Gong-Li Tang; Ben Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-21       Impact factor: 11.205

8.  The 1.3-Angstrom-resolution crystal structure of beta-ketoacyl-acyl carrier protein synthase II from Streptococcus pneumoniae.

Authors:  Allen C Price; Charles O Rock; Stephen W White
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

9.  Computational approach for prediction of domain organization and substrate specificity of modular polyketide synthases.

Authors:  Gitanjali Yadav; Rajesh S Gokhale; Debasisa Mohanty
Journal:  J Mol Biol       Date:  2003-04-25       Impact factor: 5.469

10.  Architecture of mammalian fatty acid synthase at 4.5 A resolution.

Authors:  Timm Maier; Simon Jenni; Nenad Ban
Journal:  Science       Date:  2006-03-03       Impact factor: 47.728

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  15 in total

Review 1.  The structural biology of biosynthetic megaenzymes.

Authors:  Kira J Weissman
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

2.  Ketoacylsynthase Domains of a Polyunsaturated Fatty Acid Synthase in Thraustochytrium sp. Strain ATCC 26185 Can Effectively Function as Stand-Alone Enzymes in Escherichia coli.

Authors:  Xi Xie; Dauenpen Meesapyodsuk; Xiao Qiu
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

Review 3.  Biosynthesis of Oxytetracycline by Streptomyces rimosus:
Past, Present and Future Directions in the Development
of Tetracycline Antibiotics.

Authors:  Hrvoje Petković; Tadeja Lukežič; Jagoda Šušković
Journal:  Food Technol Biotechnol       Date:  2017-03       Impact factor: 3.918

4.  Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis.

Authors:  Cécile Bon; Stéphanie Cabantous; Sylviane Julien; Valérie Guillet; Christian Chalut; Julie Rima; Yoann Brison; Wladimir Malaga; Angelique Sanchez-Dafun; Sabine Gavalda; Annaïk Quémard; Julien Marcoux; Geoffrey S Waldo; Christophe Guilhot; Lionel Mourey
Journal:  BMC Biol       Date:  2022-06-21       Impact factor: 7.364

5.  Development of an Unnatural Amino Acid Incorporation System in the Actinobacterial Natural Product Producer Streptomyces venezuelae ATCC 15439.

Authors:  Jingxuan He; Briana Van Treeck; Han B Nguyen; Charles E Melançon
Journal:  ACS Synth Biol       Date:  2015-11-18       Impact factor: 5.110

Review 6.  Iterative polyketide biosynthesis by modular polyketide synthases in bacteria.

Authors:  Haotong Chen; Liangcheng Du
Journal:  Appl Microbiol Biotechnol       Date:  2015-11-09       Impact factor: 4.813

Review 7.  Protein-protein interactions in "cis-AT" polyketide synthases.

Authors:  Greg J Dodge; Finn P Maloney; Janet L Smith
Journal:  Nat Prod Rep       Date:  2018-10-17       Impact factor: 13.423

Review 8.  Streptomyces: host for refactoring of diverse bioactive secondary metabolites.

Authors:  Vivek Sharma; Randhir Kaur; Richa Salwan
Journal:  3 Biotech       Date:  2021-06-16       Impact factor: 2.893

9.  Identification by Genome Mining of a Type I Polyketide Gene Cluster from Streptomyces argillaceus Involved in the Biosynthesis of Pyridine and Piperidine Alkaloids Argimycins P.

Authors:  Suhui Ye; Brian Molloy; Alfredo F Braña; Daniel Zabala; Carlos Olano; Jesús Cortés; Francisco Morís; José A Salas; Carmen Méndez
Journal:  Front Microbiol       Date:  2017-02-10       Impact factor: 5.640

10.  Recognition of acyl carrier proteins by ketoreductases in assembly line polyketide synthases.

Authors:  Matthew P Ostrowski; David E Cane; Chaitan Khosla
Journal:  J Antibiot (Tokyo)       Date:  2016-04-27       Impact factor: 2.649

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