Literature DB >> 23248290

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon.

Rupak Mitra1, Xianghong Li, Aurélie Kapusta, David Mayhew, Robi D Mitra, Cédric Feschotte, Nancy L Craig.   

Abstract

A revelation of the genomic age has been the contributions of the mobile DNA segments called transposable elements to chromosome structure, function, and evolution in virtually all organisms. Substantial fractions of vertebrate genomes derive from transposable elements, being dominated by retroelements that move via RNA intermediates. Although many of these elements have been inactivated by mutation, several active retroelements remain. Vertebrate genomes also contain substantial quantities and a high diversity of cut-and-paste DNA transposons, but no active representative of this class has been identified in mammals. Here we show that a cut-and-paste element called piggyBat, which has recently invaded the genome of the little brown bat (Myotis lucifugus) and is a member of the piggyBac superfamily, is active in its native form in transposition assays in bat and human cultured cells, as well as in the yeast Saccharomyces cerevisiae. Our study suggests that some DNA transposons are still actively shaping some mammalian genomes and reveals an unprecedented opportunity to study the mechanism, regulation, and genomic impact of cut-and-paste transposition in a natural mammalian host.

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Year:  2012        PMID: 23248290      PMCID: PMC3538221          DOI: 10.1073/pnas.1217548110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  51 in total

Review 1.  Transposable elements and the evolution of regulatory networks.

Authors:  Cédric Feschotte
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

2.  Reading TE leaves: new approaches to the identification of transposable element insertions.

Authors:  David A Ray; Mark A Batzer
Journal:  Genome Res       Date:  2011-06       Impact factor: 9.043

3.  Precise excision of TTAA-specific lepidopteran transposons piggyBac (IFP2) and tagalong (TFP3) from the baculovirus genome in cell lines from two species of Lepidoptera.

Authors:  M J Fraser; T Ciszczon; T Elick; C Bauser
Journal:  Insect Mol Biol       Date:  1996-05       Impact factor: 3.585

Review 4.  Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae.

Authors:  F Pâques; J E Haber
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

5.  The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage.

Authors:  John K Pace; Cédric Feschotte
Journal:  Genome Res       Date:  2007-03-05       Impact factor: 9.043

6.  Species delimitation using a combined coalescent and information-theoretic approach: an example from North American Myotis bats.

Authors:  Bryan C Carstens; Tanya A Dewey
Journal:  Syst Biol       Date:  2010-05-24       Impact factor: 15.683

7.  piggyBac can bypass DNA synthesis during cut and paste transposition.

Authors:  Rupak Mitra; Jennifer Fain-Thornton; Nancy L Craig
Journal:  EMBO J       Date:  2008-03-20       Impact factor: 11.598

8.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:  Richard A Gibbs; George M Weinstock; Michael L Metzker; Donna M Muzny; Erica J Sodergren; Steven Scherer; Graham Scott; David Steffen; Kim C Worley; Paula E Burch; Geoffrey Okwuonu; Sandra Hines; Lora Lewis; Christine DeRamo; Oliver Delgado; Shannon Dugan-Rocha; George Miner; Margaret Morgan; Alicia Hawes; Rachel Gill; Robert A Holt; Mark D Adams; Peter G Amanatides; Holly Baden-Tillson; Mary Barnstead; Soo Chin; Cheryl A Evans; Steve Ferriera; Carl Fosler; Anna Glodek; Zhiping Gu; Don Jennings; Cheryl L Kraft; Trixie Nguyen; Cynthia M Pfannkoch; Cynthia Sitter; Granger G Sutton; J Craig Venter; Trevor Woodage; Douglas Smith; Hong-Mei Lee; Erik Gustafson; Patrick Cahill; Arnold Kana; Lynn Doucette-Stamm; Keith Weinstock; Kim Fechtel; Robert B Weiss; Diane M Dunn; Eric D Green; Robert W Blakesley; Gerard G Bouffard; Pieter J De Jong; Kazutoyo Osoegawa; Baoli Zhu; Marco Marra; Jacqueline Schein; Ian Bosdet; Chris Fjell; Steven Jones; Martin Krzywinski; Carrie Mathewson; Asim Siddiqui; Natasja Wye; John McPherson; Shaying Zhao; Claire M Fraser; Jyoti Shetty; Sofiya Shatsman; Keita Geer; Yixin Chen; Sofyia Abramzon; William C Nierman; Paul H Havlak; Rui Chen; K James Durbin; Amy Egan; Yanru Ren; Xing-Zhi Song; Bingshan Li; Yue Liu; Xiang Qin; Simon Cawley; Kim C Worley; A J Cooney; Lisa M D'Souza; Kirt Martin; Jia Qian Wu; Manuel L Gonzalez-Garay; Andrew R Jackson; Kenneth J Kalafus; Michael P McLeod; Aleksandar Milosavljevic; Davinder Virk; Andrei Volkov; David A Wheeler; Zhengdong Zhang; Jeffrey A Bailey; Evan E Eichler; Eray Tuzun; Ewan Birney; Emmanuel Mongin; Abel Ureta-Vidal; Cara Woodwark; Evgeny Zdobnov; Peer Bork; Mikita Suyama; David Torrents; Marina Alexandersson; Barbara J Trask; Janet M Young; Hui Huang; Huajun Wang; Heming Xing; Sue Daniels; Darryl Gietzen; Jeanette Schmidt; Kristian Stevens; Ursula Vitt; Jim Wingrove; Francisco Camara; M Mar Albà; Josep F Abril; Roderic Guigo; Arian Smit; Inna Dubchak; Edward M Rubin; Olivier Couronne; Alexander Poliakov; Norbert Hübner; Detlev Ganten; Claudia Goesele; Oliver Hummel; Thomas Kreitler; Young-Ae Lee; Jan Monti; Herbert Schulz; Heike Zimdahl; Heinz Himmelbauer; Hans Lehrach; Howard J Jacob; Susan Bromberg; Jo Gullings-Handley; Michael I Jensen-Seaman; Anne E Kwitek; Jozef Lazar; Dean Pasko; Peter J Tonellato; Simon Twigger; Chris P Ponting; Jose M Duarte; Stephen Rice; Leo Goodstadt; Scott A Beatson; Richard D Emes; Eitan E Winter; Caleb Webber; Petra Brandt; Gerald Nyakatura; Margaret Adetobi; Francesca Chiaromonte; Laura Elnitski; Pallavi Eswara; Ross C Hardison; Minmei Hou; Diana Kolbe; Kateryna Makova; Webb Miller; Anton Nekrutenko; Cathy Riemer; Scott Schwartz; James Taylor; Shan Yang; Yi Zhang; Klaus Lindpaintner; T Dan Andrews; Mario Caccamo; Michele Clamp; Laura Clarke; Valerie Curwen; Richard Durbin; Eduardo Eyras; Stephen M Searle; Gregory M Cooper; Serafim Batzoglou; Michael Brudno; Arend Sidow; Eric A Stone; J Craig Venter; Bret A Payseur; Guillaume Bourque; Carlos López-Otín; Xose S Puente; Kushal Chakrabarti; Sourav Chatterji; Colin Dewey; Lior Pachter; Nicolas Bray; Von Bing Yap; Anat Caspi; Glenn Tesler; Pavel A Pevzner; David Haussler; Krishna M Roskin; Robert Baertsch; Hiram Clawson; Terrence S Furey; Angie S Hinrichs; Donna Karolchik; William J Kent; Kate R Rosenbloom; Heather Trumbower; Matt Weirauch; David N Cooper; Peter D Stenson; Bin Ma; Michael Brent; Manimozhiyan Arumugam; David Shteynberg; Richard R Copley; Martin S Taylor; Harold Riethman; Uma Mudunuri; Jane Peterson; Mark Guyer; Adam Felsenfeld; Susan Old; Stephen Mockrin; Francis Collins
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

9.  Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Authors:  Claudio Casola; Donald Hucks; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2007-10-16       Impact factor: 16.240

Review 10.  Integrating prokaryotes and eukaryotes: DNA transposases in light of structure.

Authors:  Alison Burgess Hickman; Michael Chandler; Fred Dyda
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-02       Impact factor: 8.250

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  32 in total

1.  Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.

Authors:  Dan Shen; Bo Gao; Csaba Miskey; Cai Chen; Yatong Sang; Wencheng Zong; Saisai Wang; Yali Wang; Xiaoyan Wang; Zoltán Ivics; Chengyi Song
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416

2.  Transposon-mediated death of an ancestral A-23-like allele: evolution of TCR-positioning motifs in the HLA-A lineage.

Authors:  Joseph S Murray
Journal:  Immunogenetics       Date:  2015-06-11       Impact factor: 2.846

3.  Dynamics of genome size evolution in birds and mammals.

Authors:  Aurélie Kapusta; Alexander Suh; Cédric Feschotte
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-08       Impact factor: 11.205

4.  Genomic landscape of human, bat, and ex vivo DNA transposon integrations.

Authors:  Rebeca Campos-Sánchez; Aurélie Kapusta; Cédric Feschotte; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2014-04-22       Impact factor: 16.240

Review 5.  The impact of transposable elements on mammalian development.

Authors:  Jose L Garcia-Perez; Thomas J Widmann; Ian R Adams
Journal:  Development       Date:  2016-11-15       Impact factor: 6.868

Review 6.  The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.

Authors:  Sandra R Richardson; Aurélien J Doucet; Huira C Kopera; John B Moldovan; José Luis Garcia-Perez; John V Moran
Journal:  Microbiol Spectr       Date:  2015-04

7.  The piggyBac-derived protein 5 (PGBD5) transposes both the closely and the distantly related piggyBac-like elements Tcr-pble and Ifp2.

Authors:  Laura Helou; Linda Beauclair; Hugues Dardente; Benoît Piégu; Louis Tsakou-Ngouafo; Thierry Lecomte; Alex Kentsis; Pierre Pontarotti; Yves Bigot
Journal:  J Mol Biol       Date:  2021-02-02       Impact factor: 5.469

8.  The unusual structure of the PiggyMac cysteine-rich domain reveals zinc finger diversity in PiggyBac-related transposases.

Authors:  Marc Guérineau; Luiza Bessa; Séverine Moriau; Ewen Lescop; François Bontems; Nathalie Mathy; Eric Guittet; Julien Bischerour; Mireille Bétermier; Nelly Morellet
Journal:  Mob DNA       Date:  2021-04-29

9.  Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil.

Authors:  Susanne Gallus; Björn M Hallström; Vikas Kumar; William G Dodt; Axel Janke; Gerald G Schumann; Maria A Nilsson
Journal:  Mol Biol Evol       Date:  2015-01-28       Impact factor: 16.240

10.  Genomic DNA transposition induced by human PGBD5.

Authors:  Anton G Henssen; Elizabeth Henaff; Eileen Jiang; Amy R Eisenberg; Julianne R Carson; Camila M Villasante; Mondira Ray; Eric Still; Melissa Burns; Jorge Gandara; Cedric Feschotte; Christopher E Mason; Alex Kentsis
Journal:  Elife       Date:  2015-09-25       Impact factor: 8.140

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