Literature DB >> 18368054

Transposable elements and the evolution of regulatory networks.

Cédric Feschotte1.   

Abstract

The control and coordination of eukaryotic gene expression rely on transcriptional and post-transcriptional regulatory networks. Although progress has been made in mapping the components and deciphering the function of these networks, the mechanisms by which such intricate circuits originate and evolve remain poorly understood. Here I revisit and expand earlier models and propose that genomic repeats, and in particular transposable elements, have been a rich source of material for the assembly and tinkering of eukaryotic gene regulatory systems.

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Year:  2008        PMID: 18368054      PMCID: PMC2596197          DOI: 10.1038/nrg2337

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  101 in total

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Authors:  W J Miller; J F McDonald; D Nouaud; D Anxolabéhère
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Review 2.  MicroRNAs: small RNAs with a big role in gene regulation.

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3.  Into the heart of darkness: large-scale clustering of human non-coding DNA.

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Review 4.  Retroposons--seeds of evolution.

Authors:  J Brosius
Journal:  Science       Date:  1991-02-15       Impact factor: 47.728

5.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

6.  Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation.

Authors:  Yi-Hong Zhou; Jessica B Zheng; Xun Gu; Grady F Saunders; W-K Alfred Yung
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

Review 7.  Genome juggling by transposons: Tam3-induced rearrangements in Antirrhinum majus.

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Journal:  Dev Genet       Date:  1989

8.  Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Authors:  Claudio Casola; Donald Hucks; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2007-10-16       Impact factor: 16.240

9.  Conserved fragments of transposable elements in intergenic regions: evidence for widespread recruitment of MIR- and L2-derived sequences within the mouse and human genomes.

Authors:  J C Silva; S A Shabalina; D G Harris; J L Spouge; A S Kondrashovi
Journal:  Genet Res       Date:  2003-08       Impact factor: 1.588

10.  Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Authors:  Tarjei S Mikkelsen; Matthew J Wakefield; Bronwen Aken; Chris T Amemiya; Jean L Chang; Shannon Duke; Manuel Garber; Andrew J Gentles; Leo Goodstadt; Andreas Heger; Jerzy Jurka; Michael Kamal; Evan Mauceli; Stephen M J Searle; Ted Sharpe; Michelle L Baker; Mark A Batzer; Panayiotis V Benos; Katherine Belov; Michele Clamp; April Cook; James Cuff; Radhika Das; Lance Davidow; Janine E Deakin; Melissa J Fazzari; Jacob L Glass; Manfred Grabherr; John M Greally; Wanjun Gu; Timothy A Hore; Gavin A Huttley; Michael Kleber; Randy L Jirtle; Edda Koina; Jeannie T Lee; Shaun Mahony; Marco A Marra; Robert D Miller; Robert D Nicholls; Mayumi Oda; Anthony T Papenfuss; Zuly E Parra; David D Pollock; David A Ray; Jacqueline E Schein; Terence P Speed; Katherine Thompson; John L VandeBerg; Claire M Wade; Jerilyn A Walker; Paul D Waters; Caleb Webber; Jennifer R Weidman; Xiaohui Xie; Michael C Zody; Jennifer A Marshall Graves; Chris P Ponting; Matthew Breen; Paul B Samollow; Eric S Lander; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2007-05-10       Impact factor: 49.962

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  536 in total

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2.  The evolution of an ancient metazoan biomineralization strategy was supported by a horizontal gene transfer.

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Review 3.  Male germline control of transposable elements.

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Review 6.  Exploring giant plant genomes with next-generation sequencing technology.

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7.  Unusual augmentation of germline genome size in Cyclops kolensis (Crustacea, Copepoda): further evidence in support of a revised model of chromatin diminution.

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Review 8.  Recognizing the enemy within: licensing RNA-guided genome defense.

Authors:  Phillip A Dumesic; Hiten D Madhani
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Review 9.  The rise of regulatory RNA.

Authors:  Kevin V Morris; John S Mattick
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10.  DNA methylation of a PLPP3 MIR transposon-based enhancer promotes an osteogenic programme in calcific aortic valve disease.

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Journal:  Cardiovasc Res       Date:  2018-09-01       Impact factor: 10.787

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