Literature DB >> 15057822

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Richard A Gibbs1, George M Weinstock, Michael L Metzker, Donna M Muzny, Erica J Sodergren, Steven Scherer, Graham Scott, David Steffen, Kim C Worley, Paula E Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine DeRamo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan, Alicia Hawes, Rachel Gill, Robert A Holt, Mark D Adams, Peter G Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, Cheryl A Evans, Steve Ferriera, Carl Fosler, Anna Glodek, Zhiping Gu, Don Jennings, Cheryl L Kraft, Trixie Nguyen, Cynthia M Pfannkoch, Cynthia Sitter, Granger G Sutton, J Craig Venter, Trevor Woodage, Douglas Smith, Hong-Mei Lee, Erik Gustafson, Patrick Cahill, Arnold Kana, Lynn Doucette-Stamm, Keith Weinstock, Kim Fechtel, Robert B Weiss, Diane M Dunn, Eric D Green, Robert W Blakesley, Gerard G Bouffard, Pieter J De Jong, Kazutoyo Osoegawa, Baoli Zhu, Marco Marra, Jacqueline Schein, Ian Bosdet, Chris Fjell, Steven Jones, Martin Krzywinski, Carrie Mathewson, Asim Siddiqui, Natasja Wye, John McPherson, Shaying Zhao, Claire M Fraser, Jyoti Shetty, Sofiya Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, William C Nierman, Paul H Havlak, Rui Chen, K James Durbin, Amy Egan, Yanru Ren, Xing-Zhi Song, Bingshan Li, Yue Liu, Xiang Qin, Simon Cawley, Kim C Worley, A J Cooney, Lisa M D'Souza, Kirt Martin, Jia Qian Wu, Manuel L Gonzalez-Garay, Andrew R Jackson, Kenneth J Kalafus, Michael P McLeod, Aleksandar Milosavljevic, Davinder Virk, Andrei Volkov, David A Wheeler, Zhengdong Zhang, Jeffrey A Bailey, Evan E Eichler, Eray Tuzun, Ewan Birney, Emmanuel Mongin, Abel Ureta-Vidal, Cara Woodwark, Evgeny Zdobnov, Peer Bork, Mikita Suyama, David Torrents, Marina Alexandersson, Barbara J Trask, Janet M Young, Hui Huang, Huajun Wang, Heming Xing, Sue Daniels, Darryl Gietzen, Jeanette Schmidt, Kristian Stevens, Ursula Vitt, Jim Wingrove, Francisco Camara, M Mar Albà, Josep F Abril, Roderic Guigo, Arian Smit, Inna Dubchak, Edward M Rubin, Olivier Couronne, Alexander Poliakov, Norbert Hübner, Detlev Ganten, Claudia Goesele, Oliver Hummel, Thomas Kreitler, Young-Ae Lee, Jan Monti, Herbert Schulz, Heike Zimdahl, Heinz Himmelbauer, Hans Lehrach, Howard J Jacob, Susan Bromberg, Jo Gullings-Handley, Michael I Jensen-Seaman, Anne E Kwitek, Jozef Lazar, Dean Pasko, Peter J Tonellato, Simon Twigger, Chris P Ponting, Jose M Duarte, Stephen Rice, Leo Goodstadt, Scott A Beatson, Richard D Emes, Eitan E Winter, Caleb Webber, Petra Brandt, Gerald Nyakatura, Margaret Adetobi, Francesca Chiaromonte, Laura Elnitski, Pallavi Eswara, Ross C Hardison, Minmei Hou, Diana Kolbe, Kateryna Makova, Webb Miller, Anton Nekrutenko, Cathy Riemer, Scott Schwartz, James Taylor, Shan Yang, Yi Zhang, Klaus Lindpaintner, T Dan Andrews, Mario Caccamo, Michele Clamp, Laura Clarke, Valerie Curwen, Richard Durbin, Eduardo Eyras, Stephen M Searle, Gregory M Cooper, Serafim Batzoglou, Michael Brudno, Arend Sidow, Eric A Stone, J Craig Venter, Bret A Payseur, Guillaume Bourque, Carlos López-Otín, Xose S Puente, Kushal Chakrabarti, Sourav Chatterji, Colin Dewey, Lior Pachter, Nicolas Bray, Von Bing Yap, Anat Caspi, Glenn Tesler, Pavel A Pevzner, David Haussler, Krishna M Roskin, Robert Baertsch, Hiram Clawson, Terrence S Furey, Angie S Hinrichs, Donna Karolchik, William J Kent, Kate R Rosenbloom, Heather Trumbower, Matt Weirauch, David N Cooper, Peter D Stenson, Bin Ma, Michael Brent, Manimozhiyan Arumugam, David Shteynberg, Richard R Copley, Martin S Taylor, Harold Riethman, Uma Mudunuri, Jane Peterson, Mark Guyer, Adam Felsenfeld, Susan Old, Stephen Mockrin, Francis Collins.   

Abstract

The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality 'draft' covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and three-way comparisons with the human and mouse genomes resolve details of mammalian evolution. This first comprehensive analysis includes genes and proteins and their relation to human disease, repeated sequences, comparative genome-wide studies of mammalian orthologous chromosomal regions and rearrangement breakpoints, reconstruction of ancestral karyotypes and the events leading to existing species, rates of variation, and lineage-specific and lineage-independent evolutionary events such as expansion of gene families, orthology relations and protein evolution.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15057822     DOI: 10.1038/nature02426

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  822 in total

Review 1.  Advances in nonhuman primate models of autism: Integrating neuroscience and behavior.

Authors:  M D Bauman; C M Schumann
Journal:  Exp Neurol       Date:  2017-08-01       Impact factor: 5.330

2.  Generating gene knockout rats by homologous recombination in embryonic stem cells.

Authors:  Chang Tong; Guanyi Huang; Charles Ashton; Ping Li; Qi-Long Ying
Journal:  Nat Protoc       Date:  2011-05-26       Impact factor: 13.491

Review 3.  Endoplasmic reticulum aminopeptidases: Biology and pathogenic potential.

Authors:  Nigil Haroon; Robert D Inman
Journal:  Nat Rev Rheumatol       Date:  2010-06-08       Impact factor: 20.543

Review 4.  Use and Importance of Nonhuman Primates in Metabolic Disease Research: Current State of the Field.

Authors:  Peter J Havel; Paul Kievit; Anthony G Comuzzie; Andrew A Bremer
Journal:  ILAR J       Date:  2017-12-01

5.  HuR function and translational state analysis following global brain ischemia and reperfusion.

Authors:  Jeffrey J Szymanski; Haihui Wang; Jill T Jamison; Donald J DeGracia
Journal:  Transl Stroke Res       Date:  2013-08-02       Impact factor: 6.829

6.  A history of recurrent positive selection at the toll-like receptor 5 in primates.

Authors:  Gabriela Wlasiuk; Soofia Khan; William M Switzer; Michael W Nachman
Journal:  Mol Biol Evol       Date:  2009-01-29       Impact factor: 16.240

Review 7.  Molecular evolution of the antiretroviral TRIM5 gene.

Authors:  Welkin E Johnson; Sara L Sawyer
Journal:  Immunogenetics       Date:  2009-02-24       Impact factor: 2.846

8.  Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome.

Authors:  Tao Liu; Wei-Jun Qian; Wan-Nan U Chen; Jon M Jacobs; Ronald J Moore; David J Anderson; Marina A Gritsenko; Matthew E Monroe; Brian D Thrall; David G Camp; Richard D Smith
Journal:  Proteomics       Date:  2005-04       Impact factor: 3.984

9.  Comparative genomics and diversifying selection of the clustered vertebrate protocadherin genes.

Authors:  Qiang Wu
Journal:  Genetics       Date:  2005-03-02       Impact factor: 4.562

10.  Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling.

Authors:  Yi Zhou; Bud Mishra
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-01       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.