Literature DB >> 23241950

Replication-coupled passive DNA demethylation for the erasure of genome imprints in mice.

Saya Kagiwada1, Kazuki Kurimoto, Takayuki Hirota, Masashi Yamaji, Mitinori Saitou.   

Abstract

Genome-wide DNA demethylation, including the erasure of genome imprints, in primordial germ cells (PGCs) is a critical first step to creating a totipotent epigenome in the germ line. We show here that, contrary to the prevailing model emphasizing active DNA demethylation, imprint erasure in mouse PGCs occurs in a manner largely consistent with replication-coupled passive DNA demethylation: PGCs erase imprints during their rapid cycling with little de novo or maintenance DNA methylation potential and no apparent major chromatin alterations. Our findings necessitate the re-evaluation of and provide novel insights into the mechanism of genome-wide DNA demethylation in PGCs.

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Year:  2012        PMID: 23241950      PMCID: PMC3567490          DOI: 10.1038/emboj.2012.331

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  53 in total

1.  UHRF1 plays a role in maintaining DNA methylation in mammalian cells.

Authors:  Magnolia Bostick; Jong Kyong Kim; Pierre-Olivier Estève; Amander Clark; Sriharsa Pradhan; Steven E Jacobsen
Journal:  Science       Date:  2007-08-02       Impact factor: 47.728

2.  Maternal and zygotic Dnmt1 are necessary and sufficient for the maintenance of DNA methylation imprints during preimplantation development.

Authors:  Ryutaro Hirasawa; Hatsune Chiba; Masahiro Kaneda; Shoji Tajima; En Li; Rudolf Jaenisch; Hiroyuki Sasaki
Journal:  Genes Dev       Date:  2008-06-15       Impact factor: 11.361

3.  Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice.

Authors:  Kazuki Kurimoto; Yukihiro Yabuta; Yasuhide Ohinata; Mayo Shigeta; Kaori Yamanaka; Mitinori Saitou
Journal:  Genes Dev       Date:  2008-06-15       Impact factor: 11.361

4.  Polycomb group protein-associated chromatin is reproduced in post-mitotic G1 phase and is required for S phase progression.

Authors:  Takahiro Aoto; Noriko Saitoh; Yasuo Sakamoto; Sugiko Watanabe; Mitsuyoshi Nakao
Journal:  J Biol Chem       Date:  2008-05-02       Impact factor: 5.157

5.  The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA.

Authors:  Jafar Sharif; Masahiro Muto; Shin-ichiro Takebayashi; Isao Suetake; Akihiro Iwamatsu; Takaho A Endo; Jun Shinga; Yoko Mizutani-Koseki; Tetsuro Toyoda; Kunihiro Okamura; Shoji Tajima; Kohzoh Mitsuya; Masaki Okano; Haruhiko Koseki
Journal:  Nature       Date:  2007-11-11       Impact factor: 49.962

6.  Chromatin dynamics during epigenetic reprogramming in the mouse germ line.

Authors:  Katia Ancelin; Tanja Waldmann; Petra Hajkova; Nicolas Lacoste; Ulrike C Lange; Francesca Cesari; Caroline Lee; Genevieve Almouzni; Robert Schneider; M Azim Surani
Journal:  Nature       Date:  2008-03-19       Impact factor: 49.962

7.  Critical function of Prdm14 for the establishment of the germ cell lineage in mice.

Authors:  Masashi Yamaji; Yoshiyuki Seki; Kazuki Kurimoto; Yukihiro Yabuta; Mihoko Yuasa; Mayo Shigeta; Kaori Yamanaka; Yasuhide Ohinata; Mitinori Saitou
Journal:  Nat Genet       Date:  2008-07-11       Impact factor: 38.330

8.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

9.  The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Authors:  Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

10.  QUMA: quantification tool for methylation analysis.

Authors:  Yuichi Kumaki; Masaaki Oda; Masaki Okano
Journal:  Nucleic Acids Res       Date:  2008-05-16       Impact factor: 16.971

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  110 in total

Review 1.  DNA methylation remodeling in vitro and in vivo.

Authors:  Amander T Clark
Journal:  Curr Opin Genet Dev       Date:  2015-10-24       Impact factor: 5.578

2.  Distinct requirements for energy metabolism in mouse primordial germ cells and their reprogramming to embryonic germ cells.

Authors:  Yohei Hayashi; Kei Otsuka; Masayuki Ebina; Kaori Igarashi; Asuka Takehara; Mitsuyo Matsumoto; Akio Kanai; Kazuhiko Igarashi; Tomoyoshi Soga; Yasuhisa Matsui
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-17       Impact factor: 11.205

Review 3.  DNA methylation in development and disease: an overview for prostate researchers.

Authors:  Diya B Joseph; Douglas W Strand; Chad M Vezina
Journal:  Am J Clin Exp Urol       Date:  2018-12-20

4.  The simplest explanation: passive DNA demethylation in PGCs.

Authors:  Zachary D Smith; Alexander Meissner
Journal:  EMBO J       Date:  2013-01-08       Impact factor: 11.598

Review 5.  DNA methylation: roles in mammalian development.

Authors:  Zachary D Smith; Alexander Meissner
Journal:  Nat Rev Genet       Date:  2013-02-12       Impact factor: 53.242

6.  Reversing DNA methylation: mechanisms, genomics, and biological functions.

Authors:  Hao Wu; Yi Zhang
Journal:  Cell       Date:  2014-01-16       Impact factor: 41.582

Review 7.  The role of 5-hydroxymethylcytosine in human cancer.

Authors:  Gerd P Pfeifer; Wenying Xiong; Maria A Hahn; Seung-Gi Jin
Journal:  Cell Tissue Res       Date:  2014-05-10       Impact factor: 5.249

Review 8.  Epigenetics in male reproduction: effect of paternal diet on sperm quality and offspring health.

Authors:  Undraga Schagdarsurengin; Klaus Steger
Journal:  Nat Rev Urol       Date:  2016-08-31       Impact factor: 14.432

9.  Long-term expansion with germline potential of human primordial germ cell-like cells in vitro.

Authors:  Yusuke Murase; Yukihiro Yabuta; Hiroshi Ohta; Chika Yamashiro; Tomonori Nakamura; Takuya Yamamoto; Mitinori Saitou
Journal:  EMBO J       Date:  2020-09-20       Impact factor: 11.598

Review 10.  Tet family of 5-methylcytosine dioxygenases in mammalian development.

Authors:  Hongbo Zhao; Taiping Chen
Journal:  J Hum Genet       Date:  2013-05-30       Impact factor: 3.172

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