Literature DB >> 23400093

DNA methylation: roles in mammalian development.

Zachary D Smith1, Alexander Meissner.   

Abstract

DNA methylation is among the best studied epigenetic modifications and is essential to mammalian development. Although the methylation status of most CpG dinucleotides in the genome is stably propagated through mitosis, improvements to methods for measuring methylation have identified numerous regions in which it is dynamically regulated. In this Review, we discuss key concepts in the function of DNA methylation in mammals, stemming from more than two decades of research, including many recent studies that have elucidated when and where DNA methylation has a regulatory role in the genome. We include insights from early development, embryonic stem cells and adult lineages, particularly haematopoiesis, to highlight the general features of this modification as it participates in both global and localized epigenetic regulation.

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Year:  2013        PMID: 23400093     DOI: 10.1038/nrg3354

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  203 in total

1.  Closely related proteins MBD2 and MBD3 play distinctive but interacting roles in mouse development.

Authors:  B Hendrich; J Guy; B Ramsahoye; V A Wilson; A Bird
Journal:  Genes Dev       Date:  2001-03-15       Impact factor: 11.361

2.  Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Authors:  Daniel Cortázar; Christophe Kunz; Jim Selfridge; Teresa Lettieri; Yusuke Saito; Eilidh MacDougall; Annika Wirz; David Schuermann; Angelika L Jacobs; Fredy Siegrist; Roland Steinacher; Josef Jiricny; Adrian Bird; Primo Schär
Journal:  Nature       Date:  2011-01-30       Impact factor: 49.962

3.  Identification of genetic elements that autonomously determine DNA methylation states.

Authors:  Florian Lienert; Christiane Wirbelauer; Indrani Som; Ann Dean; Fabio Mohn; Dirk Schübeler
Journal:  Nat Genet       Date:  2011-10-02       Impact factor: 38.330

4.  Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.

Authors:  B H Ramsahoye; D Biniszkiewicz; F Lyko; V Clark; A P Bird; R Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

5.  Dynamics and memory of heterochromatin in living cells.

Authors:  Nathaniel A Hathaway; Oliver Bell; Courtney Hodges; Erik L Miller; Dana S Neel; Gerald R Crabtree
Journal:  Cell       Date:  2012-06-14       Impact factor: 41.582

6.  Active recruitment of DNA methyltransferases regulates interleukin 4 in thymocytes and T cells.

Authors:  Karen W Makar; Mercedes Pérez-Melgosa; Maria Shnyreva; William M Weaver; David R Fitzpatrick; Christopher B Wilson
Journal:  Nat Immunol       Date:  2003-11-02       Impact factor: 25.606

7.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

8.  The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.

Authors:  Masanobu Shoji; Takashi Tanaka; Mihoko Hosokawa; Michael Reuter; Alexander Stark; Yuzuru Kato; Gen Kondoh; Katsuya Okawa; Takeshi Chujo; Tsutomu Suzuki; Kenichiro Hata; Sandra L Martin; Toshiaki Noce; Satomi Kuramochi-Miyagawa; Toru Nakano; Hiroyuki Sasaki; Ramesh S Pillai; Norio Nakatsuji; Shinichiro Chuma
Journal:  Dev Cell       Date:  2009-12       Impact factor: 12.270

9.  Requirement of Oct3/4 function for germ cell specification.

Authors:  Daiji Okamura; Yuko Tokitake; Hitoshi Niwa; Yasuhisa Matsui
Journal:  Dev Biol       Date:  2008-03-14       Impact factor: 3.582

10.  Dynamic CpG island methylation landscape in oocytes and preimplantation embryos.

Authors:  Sébastien A Smallwood; Shin-Ichi Tomizawa; Felix Krueger; Nico Ruf; Natasha Carli; Anne Segonds-Pichon; Shun Sato; Kenichiro Hata; Simon R Andrews; Gavin Kelsey
Journal:  Nat Genet       Date:  2011-06-26       Impact factor: 38.330

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  1059 in total

1.  DNA Methyltransferase 1 Controls Nephron Progenitor Cell Renewal and Differentiation.

Authors:  Nicola Wanner; Julia Vornweg; Alexander Combes; Sean Wilson; Julia Plappert; Gesa Rafflenbeul; Victor G Puelles; Raza-Ur Rahman; Timur Liwinski; Saskia Lindner; Florian Grahammer; Oliver Kretz; Mary E Wlodek; Tania Romano; Karen M Moritz; Melanie Boerries; Hauke Busch; Stefan Bonn; Melissa H Little; Wibke Bechtel-Walz; Tobias B Huber
Journal:  J Am Soc Nephrol       Date:  2018-12-05       Impact factor: 10.121

2.  TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway.

Authors:  F Neri; D Dettori; D Incarnato; A Krepelova; S Rapelli; M Maldotti; C Parlato; P Paliogiannis; S Oliviero
Journal:  Oncogene       Date:  2014-11-03       Impact factor: 9.867

Review 3.  Mechanisms underlying the formation of induced pluripotent stem cells.

Authors:  Federico González; Danwei Huangfu
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-09-18       Impact factor: 5.814

4.  How has the study of the human placenta aided our understanding of partially methylated genes?

Authors:  Diane I Schroeder; Janine M LaSalle
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

Review 5.  Clonal Hematopoiesis and Evolution to Hematopoietic Malignancies.

Authors:  Robert L Bowman; Lambert Busque; Ross L Levine
Journal:  Cell Stem Cell       Date:  2018-02-01       Impact factor: 24.633

6.  Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology.

Authors:  Michael J Ziller; Juan A Ortega; Katharina A Quinlan; David P Santos; Hongcang Gu; Eric J Martin; Christina Galonska; Ramona Pop; Susanne Maidl; Alba Di Pardo; Mei Huang; Herbert Y Meltzer; Andreas Gnirke; C J Heckman; Alexander Meissner; Evangelos Kiskinis
Journal:  Cell Stem Cell       Date:  2018-03-15       Impact factor: 24.633

Review 7.  Cellular mechanisms of somatic stem cell aging.

Authors:  Yunjoon Jung; Andrew S Brack
Journal:  Curr Top Dev Biol       Date:  2014       Impact factor: 4.897

8.  The histone deacetylase SIRT6 controls embryonic stem cell fate via TET-mediated production of 5-hydroxymethylcytosine.

Authors:  Jean-Pierre Etchegaray; Lukas Chavez; Yun Huang; Kenneth N Ross; Jiho Choi; Barbara Martinez-Pastor; Ryan M Walsh; Cesar A Sommer; Matthias Lienhard; Adrianne Gladden; Sita Kugel; Dafne M Silberman; Sridhar Ramaswamy; Gustavo Mostoslavsky; Konrad Hochedlinger; Alon Goren; Anjana Rao; Raul Mostoslavsky
Journal:  Nat Cell Biol       Date:  2015-04-27       Impact factor: 28.824

9.  Death domain-associated protein 6 (Daxx) selectively represses IL-6 transcription through histone deacetylase 1 (HDAC1)-mediated histone deacetylation in macrophages.

Authors:  Zhenyu Yao; Qian Zhang; Xia Li; Dezhi Zhao; Yiqi Liu; Kai Zhao; Yin Liu; Chunmei Wang; Minghong Jiang; Nan Li; Xuetao Cao
Journal:  J Biol Chem       Date:  2014-02-18       Impact factor: 5.157

Review 10.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

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