Literature DB >> 23719188

Tet family of 5-methylcytosine dioxygenases in mammalian development.

Hongbo Zhao1, Taiping Chen.   

Abstract

Methylation of cytosines is a major epigenetic modification in mammalian genomes. The levels and patterns of DNA methylation are the results of the opposing actions of methylating and demethylating machineries. Over the past two decades, great progress has been made in elucidating the methylating machinery including the identification and functional characterization of the DNA methyltransferases (Dnmts). However, the mechanisms of demethylation and the major players involved had been elusive. A major breakthrough came in 2009, when the ten-eleven translocation (Tet) family of proteins was discovered as 5-methylcytosine (5mC) dioxygenases that convert 5mC to 5-hydroxymethylcytosine (5hmC). Studies in the past several years have established that 5hmC serves as an intermediate in DNA demethylation and that Tet proteins have important roles in epigenetic reprogramming in early embryos and primordial germ cells. In this review, we discuss recent advances in this exciting field, focusing on the role of Tet proteins in mammalian development.

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Year:  2013        PMID: 23719188      PMCID: PMC3977598          DOI: 10.1038/jhg.2013.63

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  94 in total

1.  A signaling principle for the specification of the germ cell lineage in mice.

Authors:  Yasuhide Ohinata; Hiroshi Ohta; Mayo Shigeta; Kaori Yamanaka; Teruhiko Wakayama; Mitinori Saitou
Journal:  Cell       Date:  2009-05-01       Impact factor: 41.582

Review 2.  DNA demethylation by DNA repair.

Authors:  Mary Gehring; Wolf Reik; Steven Henikoff
Journal:  Trends Genet       Date:  2009-01-12       Impact factor: 11.639

3.  Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice.

Authors:  Kazuki Kurimoto; Yukihiro Yabuta; Yasuhide Ohinata; Mayo Shigeta; Kaori Yamanaka; Mitinori Saitou
Journal:  Genes Dev       Date:  2008-06-15       Impact factor: 11.361

4.  Germ cell specification in mice.

Authors:  Mitinori Saitou
Journal:  Curr Opin Genet Dev       Date:  2009-07-16       Impact factor: 5.578

5.  Reprogramming towards pluripotency requires AID-dependent DNA demethylation.

Authors:  Nidhi Bhutani; Jennifer J Brady; Mara Damian; Alessandra Sacco; Stéphane Y Corbel; Helen M Blau
Journal:  Nature       Date:  2010-02-25       Impact factor: 49.962

6.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

7.  Cytosine-5-methyltransferases add aldehydes to DNA.

Authors:  Zita Liutkeviciute; Grazvydas Lukinavicius; Viktoras Masevicius; Dalia Daujotyte; Saulius Klimasauskas
Journal:  Nat Chem Biol       Date:  2009-06       Impact factor: 15.040

8.  Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids.

Authors:  Lakshminarayan M Iyer; Mamta Tahiliani; Anjana Rao; L Aravind
Journal:  Cell Cycle       Date:  2009-06-27       Impact factor: 4.534

9.  The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Authors:  Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

10.  DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45.

Authors:  Kunal Rai; Ian J Huggins; Smitha R James; Adam R Karpf; David A Jones; Bradley R Cairns
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

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  24 in total

Review 1.  The role of environmental exposures and the epigenome in health and disease.

Authors:  Bambarendage P U Perera; Christopher Faulk; Laurie K Svoboda; Jaclyn M Goodrich; Dana C Dolinoy
Journal:  Environ Mol Mutagen       Date:  2019-06-20       Impact factor: 3.216

2.  Hydroxymethylation as a Novel Environmental Biosensor.

Authors:  T Dao; R Y S Cheng; M P Revelo; W Mitzner; Wy Tang
Journal:  Curr Environ Health Rep       Date:  2014-03-01

3.  Impact of polymorphisms within genes involved in regulating DNA methylation in patients with metastatic colorectal cancer enrolled in three independent, randomised, open-label clinical trials: a meta-analysis from TRIBE, MAVERICC and FIRE-3.

Authors:  Alberto Puccini; Fotios Loupakis; Sebastian Stintzing; Shu Cao; Francesca Battaglin; Ryuma Togunaka; Madiha Naseem; Martin D Berger; Shivani Soni; Wu Zhang; Christoph Mancao; Bodour Salhia; Shannon M Mumenthaler; Daniel J Weisenberger; Gangning Liang; Chiara Cremolini; Volker Heinemann; Alfredo Falcone; Joshua Millstein; Heinz-Josef Lenz
Journal:  Eur J Cancer       Date:  2019-03-07       Impact factor: 9.162

4.  Tet-Mediated DNA Demethylation Is Required for SWI/SNF-Dependent Chromatin Remodeling and Histone-Modifying Activities That Trigger Expression of the Sp7 Osteoblast Master Gene during Mesenchymal Lineage Commitment.

Authors:  Hugo Sepulveda; Alejandro Villagra; Martin Montecino
Journal:  Mol Cell Biol       Date:  2017-09-26       Impact factor: 4.272

Review 5.  Epigenetic regulation of the histone-to-protamine transition during spermiogenesis.

Authors:  Jianqiang Bao; Mark T Bedford
Journal:  Reproduction       Date:  2016-02-05       Impact factor: 3.906

Review 6.  Transcriptional and epigenetic regulation in thymic epithelial cells.

Authors:  Gustavo Ulises Martinez-Ruíz; Abigail Morales-Sánchez; Avinash Bhandoola
Journal:  Immunol Rev       Date:  2021-11-08       Impact factor: 10.983

7.  STAT5 Regulation of Sex-Dependent Hepatic CpG Methylation at Distal Regulatory Elements Mapping to Sex-Biased Genes.

Authors:  Pengying Hao; David J Waxman
Journal:  Mol Cell Biol       Date:  2021-01-25       Impact factor: 4.272

8.  Epigenetic regulation of human adipose-derived stem cells differentiation.

Authors:  Kristina Daniunaite; Inga Serenaite; Roberta Misgirdaite; Juozas Gordevicius; Ausra Unguryte; Sandrine Fleury-Cappellesso; Eiva Bernotiene; Sonata Jarmalaite
Journal:  Mol Cell Biochem       Date:  2015-08-26       Impact factor: 3.396

9.  Decreased 5-Hydroxymethylcytosine (5-hmC) predicts poor prognosis in early-stage laryngeal squamous cell carcinoma.

Authors:  Yanfang Zhang; Kexia Wu; Yuan Shao; Fang Sui; Qi Yang; Bingyin Shi; Peng Hou; Meiju Ji
Journal:  Am J Cancer Res       Date:  2016-05-01       Impact factor: 6.166

Review 10.  Crop epigenetics and the molecular hardware of genotype × environment interactions.

Authors:  Graham J King
Journal:  Front Plant Sci       Date:  2015-11-06       Impact factor: 5.753

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