Literature DB >> 24816989

The role of 5-hydroxymethylcytosine in human cancer.

Gerd P Pfeifer1, Wenying Xiong, Maria A Hahn, Seung-Gi Jin.   

Abstract

The patterns of DNA methylation in human cancer cells are highly abnormal and often involve the acquisition of DNA hypermethylation at hundreds or thousands of CpG islands that are usually unmethylated in normal tissues. The recent discovery of 5-hydroxymethylcytosine (5hmC) as an enzymatic oxidation product of 5-methylcytosine (5mC) has led to models and experimental data in which the hypermethylation and 5mC oxidation pathways seem to be connected. Key discoveries in this setting include the findings that several genes coding for proteins involved in the 5mC oxidation reaction are mutated in human tumors, and that a broad loss of 5hmC occurs across many types of cancer. In this review, we will summarize current knowledge and discuss models of the potential roles of 5hmC in human cancer biology.

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Year:  2014        PMID: 24816989      PMCID: PMC4090033          DOI: 10.1007/s00441-014-1896-7

Source DB:  PubMed          Journal:  Cell Tissue Res        ISSN: 0302-766X            Impact factor:   5.249


  124 in total

1.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

2.  Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line.

Authors:  Einav Nili Gal-Yam; Gerda Egger; Leo Iniguez; Heather Holster; Steingrímur Einarsson; Xinmin Zhang; Joy C Lin; Gangning Liang; Peter A Jones; Amos Tanay
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

3.  Cloning and expression of human G/T mismatch-specific thymine-DNA glycosylase.

Authors:  P Neddermann; P Gallinari; T Lettieri; D Schmid; O Truong; J J Hsuan; K Wiebauer; J Jiricny
Journal:  J Biol Chem       Date:  1996-05-31       Impact factor: 5.157

4.  Loss of 5-hydroxymethylcytosine and ten-eleven translocation 2 protein expression in malignant melanoma.

Authors:  Thilo Gambichler; Michael Sand; Marina Skrygan
Journal:  Melanoma Res       Date:  2013-06       Impact factor: 3.599

5.  Decreased 5-hydroxymethylcytosine is associated with neural progenitor phenotype in normal brain and shorter survival in malignant glioma.

Authors:  Brent A Orr; Michael C Haffner; William G Nelson; Srinivasan Yegnasubramanian; Charles G Eberhart
Journal:  PLoS One       Date:  2012-07-19       Impact factor: 3.240

6.  Oncometabolite 2-hydroxyglutarate is a competitive inhibitor of α-ketoglutarate-dependent dioxygenases.

Authors:  Wei Xu; Hui Yang; Ying Liu; Ying Yang; Ping Wang; Se-Hee Kim; Shinsuke Ito; Chen Yang; Pu Wang; Meng-Tao Xiao; Li-xia Liu; Wen-qing Jiang; Jing Liu; Jin-ye Zhang; Bin Wang; Stephen Frye; Yi Zhang; Yan-hui Xu; Qun-ying Lei; Kun-Liang Guan; Shi-min Zhao; Yue Xiong
Journal:  Cancer Cell       Date:  2011-01-18       Impact factor: 38.585

Review 7.  5-hydroxymethylcytosine profiling as an indicator of cellular state.

Authors:  Alexander Laird; John P Thomson; David J Harrison; Richard R Meehan
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

8.  Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns.

Authors:  Duncan Sproul; Robert R Kitchen; Colm E Nestor; J Michael Dixon; Andrew H Sims; David J Harrison; Bernard H Ramsahoye; Richard R Meehan
Journal:  Genome Biol       Date:  2012-10-03       Impact factor: 13.583

9.  Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Authors:  Kathryn Blaschke; Kevin T Ebata; Mohammad M Karimi; Jorge A Zepeda-Martínez; Preeti Goyal; Sahasransu Mahapatra; Angela Tam; Diana J Laird; Martin Hirst; Anjana Rao; Matthew C Lorincz; Miguel Ramalho-Santos
Journal:  Nature       Date:  2013-06-30       Impact factor: 49.962

10.  Cell cycle-dependent turnover of 5-hydroxymethyl cytosine in mouse embryonic stem cells.

Authors:  Junji Otani; Hironobu Kimura; Jafar Sharif; Takaho A Endo; Yuichi Mishima; Toru Kawakami; Haruhiko Koseki; Masahiro Shirakawa; Isao Suetake; Shoji Tajima
Journal:  PLoS One       Date:  2013-12-10       Impact factor: 3.240

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  35 in total

1.  Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.

Authors:  Xi-liang Wang; Shu-hui Song; Yong-Sheng Wu; Yu-Li Li; Ting-ting Chen; Zhi-yuan Huang; Shuo Liu; Thomas L Dunwell; Gerd P Pfeifer; Jim M Dunwell; Raheema Wamaedeesa; Ihsan Ullah; Yinsheng Wang; Song-nian Hu
Journal:  J Exp Bot       Date:  2015-08-13       Impact factor: 6.992

Review 2.  DNA methylation in development and disease: an overview for prostate researchers.

Authors:  Diya B Joseph; Douglas W Strand; Chad M Vezina
Journal:  Am J Clin Exp Urol       Date:  2018-12-20

3.  TET2 controls chemoresistant slow-cycling cancer cell survival and tumor recurrence.

Authors:  Isabel Puig; Stephan P Tenbaum; Irene Chicote; Oriol Arqués; Jordi Martínez-Quintanilla; Estefania Cuesta-Borrás; Lorena Ramírez; Pilar Gonzalo; Atenea Soto; Susana Aguilar; Cristina Eguizabal; Ginevra Caratù; Aleix Prat; Guillem Argilés; Stefania Landolfi; Oriol Casanovas; Violeta Serra; Alberto Villanueva; Alicia G Arroyo; Luigi Terracciano; Paolo Nuciforo; Joan Seoane; Juan A Recio; Ana Vivancos; Rodrigo Dienstmann; Josep Tabernero; Héctor G Palmer
Journal:  J Clin Invest       Date:  2018-08-06       Impact factor: 14.808

Review 4.  5-Hydroxymethylcytosine: a stable or transient DNA modification?

Authors:  Maria A Hahn; Piroska E Szabó; Gerd P Pfeifer
Journal:  Genomics       Date:  2014-08-30       Impact factor: 5.736

5.  C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide.

Authors:  Syed Khund Sayeed; Jianfei Zhao; Bangalore K Sathyanarayana; Jaya Prakash Golla; Charles Vinson
Journal:  Biochim Biophys Acta       Date:  2015-03-13

6.  Arsenic exposure and human blood DNA methylation and hydroxymethylation profiles in two diverse populations from Bangladesh and Spain.

Authors:  Arce Domingo-Relloso; Anne Bozack; Samara Kiihl; Zulema Rodriguez-Hernandez; Pilar Rentero-Garrido; J Antonio Casasnovas; Montserrat Leon-Latre; Tamara Garcia-Barrera; J Luis Gomez-Ariza; Belen Moreno; Ana Cenarro; Griselda de Marco; Faruque Parvez; Abu B Siddique; Hasan Shahriar; Mohammad N Uddin; Tariqul Islam; Ana Navas-Acien; Mary Gamble; Maria Tellez-Plaza
Journal:  Environ Res       Date:  2021-09-10       Impact factor: 6.498

7.  Navigating the hydroxymethylome: experimental biases and quality control tools for the tandem bisulfite and oxidative bisulfite Illumina microarrays.

Authors:  Ze Zhang; Min Kyung Lee; Laurent Perreard; Karl T Kelsey; Brock C Christensen; Lucas A Salas
Journal:  Epigenomics       Date:  2022-01-14       Impact factor: 4.778

8.  Impact of 5HydroxyMethylCytosine (5hmC) on reverse/direct association of cell-cycle, apoptosis, and extracellular matrix pathways in gastrointestinal cancers.

Authors:  Sayyed Sajjad Moravveji; Samane Khoshbakht; Majid Mokhtari; Mahdieh Salimi; Hossein Lanjanian; Sajjad Nematzadeh; Mahsa Torkamanian-Afshar; Ali Masoudi-Nejad
Journal:  BMC Genom Data       Date:  2022-06-29

9.  Effect of Hydroxymethylcytosine on the Structure and Stability of Holliday Junctions.

Authors:  Crystal M Vander Zanden; Rhianon K Rowe; Amanda J Broad; Adam B Robertson; P Shing Ho
Journal:  Biochemistry       Date:  2016-10-05       Impact factor: 3.162

Review 10.  Digging deep into "dirty" drugs - modulation of the methylation machinery.

Authors:  Lisa Pleyer; Richard Greil
Journal:  Drug Metab Rev       Date:  2015-01-08       Impact factor: 4.518

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