Literature DB >> 23232937

Recent developments and applications of saturation transfer difference nuclear magnetic resonance (STD NMR) spectroscopy.

Jane L Wagstaff1, Samantha L Taylor, Mark J Howard.   

Abstract

This review aims to illustrate that STD NMR is not simply a method for drug screening and discovery, but has qualitative and quantitative applications that can answer fundamental and applied biological and biomedical questions involving molecular interactions between ligands and proteins. We begin with a basic introduction to the technique of STD NMR and report on recent advances and biological applications of STD including studies to follow the interactions of non-steroidal anti-inflammatories, minimum binding requirements for virus infection and understating inhibition of amyloid fibre formation. We expand on this introduction by reporting recent STD NMR studies of live-cell receptor systems, new methodologies using scanning STD, magic-angle spinning STD and approaches to use STD NMR in a quantitative fashion for dissociation constants and group epitope mapping (GEM) determination. We finish by outlining new approaches that have potential to influence future applications of the technique; NMR isotope-editing, heteronuclear multidimensional STD and (19)F STD methods that are becoming more amenable due to the latest NMR equipment technologies.

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Year:  2013        PMID: 23232937     DOI: 10.1039/c2mb25395j

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  23 in total

1.  Identification of an Auxiliary Leader Peptide-Binding Protein Required for Azoline Formation in Ribosomal Natural Products.

Authors:  Kyle L Dunbar; Jonathan I Tietz; Courtney L Cox; Brandon J Burkhart; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2015-06-12       Impact factor: 15.419

2.  Ligand-observed NMR techniques to probe RNA-small molecule interactions.

Authors:  David R Calabrese; Colleen M Connelly; John S Schneekloth
Journal:  Methods Enzymol       Date:  2019-06-06       Impact factor: 1.600

3.  Fluorine-19 NMR and computational quantification of isoflurane binding to the voltage-gated sodium channel NaChBac.

Authors:  Monica N Kinde; Vasyl Bondarenko; Daniele Granata; Weiming Bu; Kimberly C Grasty; Patrick J Loll; Vincenzo Carnevale; Michael L Klein; Roderic G Eckenhoff; Pei Tang; Yan Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-15       Impact factor: 11.205

Review 4.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

5.  Hydrogen-bonded His93 as a sensitive probe for identifying inhibitors of the endocannabinoid transport protein FABP7.

Authors:  Sergiy Tyukhtenko; Karrie Chan; Rubin Jiang; Han Zhou; Richard W Mercier; De-Ping Yang; Alexandros Makriyannis; Jason J Guo
Journal:  Chem Biol Drug Des       Date:  2014-10-16       Impact factor: 2.817

6.  Exploring the chemical space of multitarget ligands using aligned self-organizing maps.

Authors:  Janosch Achenbach; Franca-Maria Klingler; René Blöcher; Daniel Moser; Ann-Kathrin Häfner; Carmen B Rödl; Simon Kretschmer; Björn Krüger; Frank Löhr; Holger Stark; Bettina Hofmann; Dieter Steinhilber; Ewgenij Proschak
Journal:  ACS Med Chem Lett       Date:  2013-10-23       Impact factor: 4.345

7.  Two classes of cholesterol binding sites for the β2AR revealed by thermostability and NMR.

Authors:  Deborah L Gater; Olivier Saurel; Iordan Iordanov; Wei Liu; Vadim Cherezov; Alain Milon
Journal:  Biophys J       Date:  2014-11-18       Impact factor: 4.033

8.  Optimising selective excitation pulses to maximise saturation transfer difference NMR spectroscopy.

Authors:  Nathan B Ley; Michelle L Rowe; Richard A Williamson; Mark J Howard
Journal:  RSC Adv       Date:  2014-01-08       Impact factor: 3.361

Review 9.  Recent contributions of structure-based drug design to the development of antibacterial compounds.

Authors:  Bart L Staker; Garry W Buchko; Peter J Myler
Journal:  Curr Opin Microbiol       Date:  2015-10       Impact factor: 7.934

10.  Effects of Stereochemistry and Hydrogen Bonding on Glycopolymer-Amyloid-β Interactions.

Authors:  Ashleigh N Bristol; Jhinuk Saha; Hannah E George; Pradipta K Das; Lisa K Kemp; William L Jarrett; Vijayaraghavan Rangachari; Sarah E Morgan
Journal:  Biomacromolecules       Date:  2020-08-20       Impact factor: 6.988

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