Literature DB >> 26458180

Recent contributions of structure-based drug design to the development of antibacterial compounds.

Bart L Staker1, Garry W Buchko2, Peter J Myler3.   

Abstract

According to a Pew Research study published in February 2015, there are 37 antibacterial programs currently in clinical trials in the United States. Protein structure-based methods for guiding small molecule design were used in at least 34 of these programs. Typically, this occurred at an early stage (drug discovery and/or lead optimization) prior to an Investigational New Drug (IND) application, although sometimes in retrospective studies to rationalize biological activity. Recognizing that structure-based methods are resource-intensive and often require specialized equipment and training, the NIAID has funded two Structural Genomics Centers to determine structures of infectious disease species proteins with the aim of supporting individual investigators' research programs with structural biology methods.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26458180      PMCID: PMC4659754          DOI: 10.1016/j.mib.2015.09.003

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  50 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Mapping protein-protein interactions in solution by NMR spectroscopy.

Authors:  Erik R P Zuiderweg
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

3.  TINS, target immobilized NMR screening: an efficient and sensitive method for ligand discovery.

Authors:  Sophie Vanwetswinkel; Robert J Heetebrij; John van Duynhoven; Johan G Hollander; Dmitri V Filippov; Philip J Hajduk; Gregg Siegal
Journal:  Chem Biol       Date:  2005-02

4.  Avibactam and class C β-lactamases: mechanism of inhibition, conservation of the binding pocket, and implications for resistance.

Authors:  S D Lahiri; M R Johnstone; P L Ross; R E McLaughlin; N B Olivier; R A Alm
Journal:  Antimicrob Agents Chemother       Date:  2014-07-14       Impact factor: 5.191

Review 5.  Recent developments and applications of saturation transfer difference nuclear magnetic resonance (STD NMR) spectroscopy.

Authors:  Jane L Wagstaff; Samantha L Taylor; Mark J Howard
Journal:  Mol Biosyst       Date:  2013-04-05

6.  Looking for the new preparations for antibacterial therapy. II. Clinical trials; new beta-lactam antibiotics and beta-lactamase inhibitors.

Authors:  Izabela Karpiuk; Stefan Tyski
Journal:  Przegl Epidemiol       Date:  2013

Review 7.  β-lactam and β-lactamase inhibitor combinations in the treatment of extended-spectrum β-lactamase producing Enterobacteriaceae: time for a reappraisal in the era of few antibiotic options?

Authors:  Patrick N A Harris; Paul A Tambyah; David L Paterson
Journal:  Lancet Infect Dis       Date:  2015-02-23       Impact factor: 25.071

8.  Avibactam is a covalent, reversible, non-β-lactam β-lactamase inhibitor.

Authors:  David E Ehmann; Haris Jahić; Philip L Ross; Rong-Fang Gu; Jun Hu; Gunther Kern; Grant K Walkup; Stewart L Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

9.  Structural Genomics Support for Infectious Disease Drug Design.

Authors:  Robin Stacy; Wayne F Anderson; Peter J Myler
Journal:  ACS Infect Dis       Date:  2015-01-20       Impact factor: 5.084

10.  Combining functional and structural genomics to sample the essential Burkholderia structome.

Authors:  Loren Baugh; Larry A Gallagher; Rapatbhorn Patrapuvich; Matthew C Clifton; Anna S Gardberg; Thomas E Edwards; Brianna Armour; Darren W Begley; Shellie H Dieterich; David M Dranow; Jan Abendroth; James W Fairman; David Fox; Bart L Staker; Isabelle Phan; Angela Gillespie; Ryan Choi; Steve Nakazawa-Hewitt; Mary Trang Nguyen; Alberto Napuli; Lynn Barrett; Garry W Buchko; Robin Stacy; Peter J Myler; Lance J Stewart; Colin Manoil; Wesley C Van Voorhis
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

View more
  7 in total

Review 1.  In Silico Discovery of Novel Ligands for Antimicrobial Lipopeptides for Computer-Aided Drug Design.

Authors:  Satya Eswari Jujjavarapu; Swasti Dhagat
Journal:  Probiotics Antimicrob Proteins       Date:  2018-06       Impact factor: 4.609

2.  Structural diversity in the Mycobacteria DUF3349 superfamily.

Authors:  Garry W Buchko; Jan Abendroth; John I Robinson; Isabelle Q Phan; Peter J Myler; Thomas E Edwards
Journal:  Protein Sci       Date:  2019-11-21       Impact factor: 6.725

3.  Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics.

Authors:  Garry W Buchko; Stephen N Hewitt; Wesley C Van Voorhis; Peter J Myler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-01-01       Impact factor: 1.056

4.  Using Fragment-Based Approaches to Discover New Antibiotics.

Authors:  Bas Lamoree; Roderick E Hubbard
Journal:  SLAS Discov       Date:  2018-07       Impact factor: 3.341

5.  Macromolecular Structure Assembly as a Novel Antibiotic Target.

Authors:  Scott Champney
Journal:  Antibiotics (Basel)       Date:  2022-07-13

6.  Ligand and Structure-Based Approaches for the Identification of Peptide Deformylase Inhibitors as Antibacterial Drugs.

Authors:  Jian Gao; Li Liang; Yasheng Zhu; Shengzhi Qiu; Tao Wang; Ling Zhang
Journal:  Int J Mol Sci       Date:  2016-07-15       Impact factor: 5.923

Review 7.  Mode of action of lipoprotein modification enzymes-Novel antibacterial targets.

Authors:  Simon Legood; Ivo G Boneca; Nienke Buddelmeijer
Journal:  Mol Microbiol       Date:  2020-10-12       Impact factor: 3.501

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.